Hb_048937_060

Information

Type -
Description -
Location Contig48937: 32602-37649
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23510g
description POPTRDRAFT_1122718; hypothetical protein
nr
ID XP_012081708.1
description PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID A0A067K103
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18737 PE=4 SV=1
Gene Ontology
ID GO:0005576
description probable rhamnogalacturonate lyase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45171: 33899-34930 , PASA_asmbl_45172: 34989-36811 , PASA_asmbl_45173: 36981-37550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048937_060 0.0 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
2 Hb_001348_170 0.1255903466 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
3 Hb_003678_020 0.1337186257 - - conserved hypothetical protein [Ricinus communis]
4 Hb_121729_010 0.1345338368 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000665_140 0.1346501565 - - PREDICTED: protein MEMO1 [Jatropha curcas]
6 Hb_014720_110 0.1417067969 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
7 Hb_000331_180 0.1434399729 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
8 Hb_002439_010 0.147590606 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
9 Hb_003050_270 0.1489831637 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
10 Hb_042729_020 0.1489915499 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
11 Hb_000329_760 0.1519664566 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
12 Hb_012055_030 0.1520623228 - - Protein FRIGIDA, putative [Ricinus communis]
13 Hb_168893_020 0.153179351 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
14 Hb_000853_150 0.1532960219 - - Fumarase 1 isoform 2 [Theobroma cacao]
15 Hb_000167_010 0.1534534489 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000034_070 0.1539492486 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
17 Hb_000621_070 0.1544766064 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_000381_120 0.1546350354 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
19 Hb_000731_160 0.1554993815 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
20 Hb_011282_020 0.155602048 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_048937_060 Hb_048937_060 Hb_001348_170 Hb_001348_170 Hb_048937_060--Hb_001348_170 Hb_003678_020 Hb_003678_020 Hb_048937_060--Hb_003678_020 Hb_121729_010 Hb_121729_010 Hb_048937_060--Hb_121729_010 Hb_000665_140 Hb_000665_140 Hb_048937_060--Hb_000665_140 Hb_014720_110 Hb_014720_110 Hb_048937_060--Hb_014720_110 Hb_000331_180 Hb_000331_180 Hb_048937_060--Hb_000331_180 Hb_004837_270 Hb_004837_270 Hb_001348_170--Hb_004837_270 Hb_001629_080 Hb_001629_080 Hb_001348_170--Hb_001629_080 Hb_002686_170 Hb_002686_170 Hb_001348_170--Hb_002686_170 Hb_000621_070 Hb_000621_070 Hb_001348_170--Hb_000621_070 Hb_000035_500 Hb_000035_500 Hb_001348_170--Hb_000035_500 Hb_004070_020 Hb_004070_020 Hb_001348_170--Hb_004070_020 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_003678_020--Hb_014720_110 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_001828_150 Hb_001828_150 Hb_121729_010--Hb_001828_150 Hb_001472_100 Hb_001472_100 Hb_121729_010--Hb_001472_100 Hb_009898_050 Hb_009898_050 Hb_121729_010--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_121729_010--Hb_000110_310 Hb_001189_070 Hb_001189_070 Hb_121729_010--Hb_001189_070 Hb_008616_050 Hb_008616_050 Hb_121729_010--Hb_008616_050 Hb_004157_050 Hb_004157_050 Hb_000665_140--Hb_004157_050 Hb_000665_140--Hb_001301_110 Hb_003058_120 Hb_003058_120 Hb_000665_140--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000665_140--Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_000665_140--Hb_000853_150 Hb_000167_010 Hb_000167_010 Hb_000665_140--Hb_000167_010 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_003622_030 Hb_003622_030 Hb_014720_110--Hb_003622_030 Hb_000783_010 Hb_000783_010 Hb_000331_180--Hb_000783_010 Hb_000034_070 Hb_000034_070 Hb_000331_180--Hb_000034_070 Hb_032808_010 Hb_032808_010 Hb_000331_180--Hb_032808_010 Hb_001366_370 Hb_001366_370 Hb_000331_180--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_000331_180--Hb_000510_300 Hb_002445_060 Hb_002445_060 Hb_000331_180--Hb_002445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56254 1.01253 7.23013 3.21103 1.28073 3.51616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.80124 5.18298 3.50105 8.49434 3.96802

CAGE analysis