Hb_049014_010

Information

Type -
Description -
Location Contig49014: 30-973
Sequence    

Annotation

kegg
ID vvi:104878099
description uncharacterized LOC104878099
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049014_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_075481_010 0.034141546 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_000656_130 0.0754534776 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
4 Hb_000454_020 0.0821267082 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_142068_020 0.0833036877 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
6 Hb_122567_010 0.1492499922 - - -
7 Hb_005671_030 0.2343941583 - - -
8 Hb_187661_010 0.2414042933 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
9 Hb_178389_010 0.2423343906 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
10 Hb_002498_200 0.2655510683 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
11 Hb_005539_300 0.2695986784 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
12 Hb_001676_030 0.2825646723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007467_020 0.2849533829 - - -
14 Hb_000011_030 0.2880841534 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
15 Hb_000015_110 0.2880841534 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
16 Hb_000029_040 0.2880841534 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000030_110 0.2880841534 - - -
18 Hb_000034_130 0.2880841534 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000046_470 0.2880841534 - - glutaredoxin, grx, putative [Ricinus communis]
20 Hb_000058_010 0.2880841534 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_049014_010 Hb_049014_010 Hb_075481_010 Hb_075481_010 Hb_049014_010--Hb_075481_010 Hb_000656_130 Hb_000656_130 Hb_049014_010--Hb_000656_130 Hb_000454_020 Hb_000454_020 Hb_049014_010--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_049014_010--Hb_142068_020 Hb_122567_010 Hb_122567_010 Hb_049014_010--Hb_122567_010 Hb_005671_030 Hb_005671_030 Hb_049014_010--Hb_005671_030 Hb_075481_010--Hb_000656_130 Hb_075481_010--Hb_000454_020 Hb_075481_010--Hb_142068_020 Hb_075481_010--Hb_122567_010 Hb_002498_200 Hb_002498_200 Hb_075481_010--Hb_002498_200 Hb_000656_130--Hb_000454_020 Hb_000656_130--Hb_142068_020 Hb_000656_130--Hb_122567_010 Hb_187661_010 Hb_187661_010 Hb_000656_130--Hb_187661_010 Hb_000454_020--Hb_142068_020 Hb_000454_020--Hb_122567_010 Hb_000454_020--Hb_187661_010 Hb_142068_020--Hb_122567_010 Hb_142068_020--Hb_187661_010 Hb_178389_010 Hb_178389_010 Hb_122567_010--Hb_178389_010 Hb_005671_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_005671_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_005671_030--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_005671_030--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_005671_030--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_005671_030--Hb_003985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119534 0 0 0 0 0.0221615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis