Hb_049160_010

Information

Type -
Description -
Location Contig49160: 230-822
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03650g
description POPTRDRAFT_568367; hypothetical protein
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID O81833
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049160_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_063480_020 0.1516232346 - - unnamed protein product [Vitis vinifera]
3 Hb_157846_010 0.1595920871 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_000497_010 0.1810546643 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
5 Hb_141918_010 0.1955377231 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_001907_100 0.2001982879 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
7 Hb_010727_010 0.2022188289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_097347_010 0.2035715639 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
9 Hb_000537_140 0.212141233 - - lupus la ribonucleoprotein, putative [Ricinus communis]
10 Hb_006185_020 0.2129713284 - - PREDICTED: midasin [Jatropha curcas]
11 Hb_002837_110 0.2160459639 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
12 Hb_005375_040 0.2164427474 - - dicer-1, putative [Ricinus communis]
13 Hb_141212_010 0.2182296788 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_116638_010 0.2187636168 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000649_010 0.2209153154 - - PREDICTED: adagio protein 3 [Jatropha curcas]
16 Hb_001301_230 0.2219132827 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
17 Hb_006588_150 0.2230284086 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
18 Hb_009848_040 0.2230434924 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
19 Hb_054885_020 0.2260380818 - - -
20 Hb_000230_040 0.2266345304 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_049160_010 Hb_049160_010 Hb_063480_020 Hb_063480_020 Hb_049160_010--Hb_063480_020 Hb_157846_010 Hb_157846_010 Hb_049160_010--Hb_157846_010 Hb_000497_010 Hb_000497_010 Hb_049160_010--Hb_000497_010 Hb_141918_010 Hb_141918_010 Hb_049160_010--Hb_141918_010 Hb_001907_100 Hb_001907_100 Hb_049160_010--Hb_001907_100 Hb_010727_010 Hb_010727_010 Hb_049160_010--Hb_010727_010 Hb_054885_020 Hb_054885_020 Hb_063480_020--Hb_054885_020 Hb_000406_110 Hb_000406_110 Hb_063480_020--Hb_000406_110 Hb_000537_140 Hb_000537_140 Hb_063480_020--Hb_000537_140 Hb_006588_150 Hb_006588_150 Hb_063480_020--Hb_006588_150 Hb_002837_110 Hb_002837_110 Hb_063480_020--Hb_002837_110 Hb_001396_150 Hb_001396_150 Hb_157846_010--Hb_001396_150 Hb_000649_010 Hb_000649_010 Hb_157846_010--Hb_000649_010 Hb_004883_060 Hb_004883_060 Hb_157846_010--Hb_004883_060 Hb_000217_060 Hb_000217_060 Hb_157846_010--Hb_000217_060 Hb_157846_010--Hb_063480_020 Hb_011671_230 Hb_011671_230 Hb_000497_010--Hb_011671_230 Hb_000768_180 Hb_000768_180 Hb_000497_010--Hb_000768_180 Hb_005260_040 Hb_005260_040 Hb_000497_010--Hb_005260_040 Hb_012184_060 Hb_012184_060 Hb_000497_010--Hb_012184_060 Hb_155159_010 Hb_155159_010 Hb_000497_010--Hb_155159_010 Hb_001369_770 Hb_001369_770 Hb_000497_010--Hb_001369_770 Hb_010487_020 Hb_010487_020 Hb_141918_010--Hb_010487_020 Hb_141918_010--Hb_010727_010 Hb_003060_090 Hb_003060_090 Hb_141918_010--Hb_003060_090 Hb_000905_170 Hb_000905_170 Hb_141918_010--Hb_000905_170 Hb_001123_290 Hb_001123_290 Hb_141918_010--Hb_001123_290 Hb_000227_060 Hb_000227_060 Hb_141918_010--Hb_000227_060 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_181975_010 Hb_181975_010 Hb_001907_100--Hb_181975_010 Hb_007257_050 Hb_007257_050 Hb_001907_100--Hb_007257_050 Hb_001183_010 Hb_001183_010 Hb_010727_010--Hb_001183_010 Hb_000025_340 Hb_000025_340 Hb_010727_010--Hb_000025_340 Hb_081745_010 Hb_081745_010 Hb_010727_010--Hb_081745_010 Hb_000087_050 Hb_000087_050 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9232 24.1396 5.95942 4.7852 2.42162 32.8488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34163 7.55147 2.02445 12.0075 3.79169

CAGE analysis