Hb_049415_020

Information

Type -
Description -
Location Contig49415: 6441-8176
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45415: 6846-7993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049415_020 0.0 - - -
2 Hb_002078_050 0.1366398471 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
3 Hb_000330_170 0.1403049589 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
4 Hb_008725_200 0.1403407187 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
5 Hb_021888_130 0.1404733135 - - -
6 Hb_033448_010 0.1447445654 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
7 Hb_001999_060 0.1454990629 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
8 Hb_008016_010 0.1486305394 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
9 Hb_000101_170 0.149218047 - - -
10 Hb_000189_530 0.1536915527 - - 40S ribosomal protein S24B [Hevea brasiliensis]
11 Hb_001902_050 0.1548543186 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
12 Hb_002687_050 0.1580019702 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
13 Hb_000152_430 0.1583936026 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
14 Hb_005063_010 0.1589007075 - - HEV1.1 [Hevea brasiliensis]
15 Hb_000414_070 0.1593176657 - - -
16 Hb_005539_290 0.1596914419 - - unknown [Lotus japonicus]
17 Hb_002038_060 0.1601254031 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
18 Hb_012725_090 0.1608628128 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_002025_320 0.1611953835 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
20 Hb_000032_540 0.1624922286 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_049415_020 Hb_049415_020 Hb_002078_050 Hb_002078_050 Hb_049415_020--Hb_002078_050 Hb_000330_170 Hb_000330_170 Hb_049415_020--Hb_000330_170 Hb_008725_200 Hb_008725_200 Hb_049415_020--Hb_008725_200 Hb_021888_130 Hb_021888_130 Hb_049415_020--Hb_021888_130 Hb_033448_010 Hb_033448_010 Hb_049415_020--Hb_033448_010 Hb_001999_060 Hb_001999_060 Hb_049415_020--Hb_001999_060 Hb_011161_040 Hb_011161_040 Hb_002078_050--Hb_011161_040 Hb_000152_430 Hb_000152_430 Hb_002078_050--Hb_000152_430 Hb_002078_450 Hb_002078_450 Hb_002078_050--Hb_002078_450 Hb_000089_130 Hb_000089_130 Hb_002078_050--Hb_000089_130 Hb_001427_120 Hb_001427_120 Hb_002078_050--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_002078_050--Hb_001718_100 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000061_160 Hb_000061_160 Hb_000330_170--Hb_000061_160 Hb_002200_120 Hb_002200_120 Hb_000330_170--Hb_002200_120 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000369_090 Hb_000369_090 Hb_000330_170--Hb_000369_090 Hb_002687_050 Hb_002687_050 Hb_008725_200--Hb_002687_050 Hb_134789_010 Hb_134789_010 Hb_008725_200--Hb_134789_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090 Hb_021888_130--Hb_000330_170 Hb_002400_090 Hb_002400_090 Hb_021888_130--Hb_002400_090 Hb_021888_130--Hb_008725_200 Hb_021888_130--Hb_033448_010 Hb_000243_010 Hb_000243_010 Hb_021888_130--Hb_000243_010 Hb_000563_530 Hb_000563_530 Hb_033448_010--Hb_000563_530 Hb_033448_010--Hb_000369_090 Hb_000184_120 Hb_000184_120 Hb_033448_010--Hb_000184_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_002038_060 Hb_002038_060 Hb_001999_060--Hb_002038_060 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_026048_100 Hb_026048_100 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480 Hb_103873_010 Hb_103873_010 Hb_001999_060--Hb_103873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97572 0.0768413 0.0689701 0.913498 2.90528 5.11674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62867 3.71842 3.02253 1.22196 0

CAGE analysis