Hb_049483_010

Information

Type -
Description -
Location Contig49483: 28-630
Sequence    

Annotation

kegg
ID rcu:RCOM_0757640
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_002526429.1
description leucyl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q54N83
description Leucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1
trembl
ID B9SKB0
description Leucyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0757640 PE=3 SV=1
Gene Ontology
ID GO:0005737
description leucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049483_010 0.0 - - leucyl-tRNA synthetase, putative [Ricinus communis]
2 Hb_007926_040 0.2209602396 - - sulfate transporter, putative [Ricinus communis]
3 Hb_007101_200 0.225114227 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
4 Hb_022250_170 0.2328856715 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
5 Hb_000250_080 0.2338420908 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
6 Hb_008247_010 0.2407620596 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_007603_010 0.2408207514 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007348_040 0.2443745851 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
9 Hb_000163_280 0.2523036719 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
10 Hb_022288_020 0.2539485683 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
11 Hb_150528_010 0.2542843398 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002159_030 0.2572895541 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
13 Hb_032920_100 0.2610607795 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
14 Hb_007904_080 0.2611537545 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
15 Hb_004096_020 0.2619068018 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
16 Hb_000250_070 0.2620846122 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
17 Hb_006452_090 0.2626874579 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
18 Hb_000010_180 0.2633466923 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
19 Hb_015884_030 0.2634749157 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
20 Hb_009421_030 0.2639296692 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]

Gene co-expression network

sample Hb_049483_010 Hb_049483_010 Hb_007926_040 Hb_007926_040 Hb_049483_010--Hb_007926_040 Hb_007101_200 Hb_007101_200 Hb_049483_010--Hb_007101_200 Hb_022250_170 Hb_022250_170 Hb_049483_010--Hb_022250_170 Hb_000250_080 Hb_000250_080 Hb_049483_010--Hb_000250_080 Hb_008247_010 Hb_008247_010 Hb_049483_010--Hb_008247_010 Hb_007603_010 Hb_007603_010 Hb_049483_010--Hb_007603_010 Hb_022288_020 Hb_022288_020 Hb_007926_040--Hb_022288_020 Hb_000016_110 Hb_000016_110 Hb_007926_040--Hb_000016_110 Hb_004048_090 Hb_004048_090 Hb_007926_040--Hb_004048_090 Hb_041091_010 Hb_041091_010 Hb_007926_040--Hb_041091_010 Hb_012395_190 Hb_012395_190 Hb_007926_040--Hb_012395_190 Hb_010436_020 Hb_010436_020 Hb_007926_040--Hb_010436_020 Hb_003206_020 Hb_003206_020 Hb_007101_200--Hb_003206_020 Hb_000832_130 Hb_000832_130 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_000959_090 Hb_000959_090 Hb_007101_200--Hb_000959_090 Hb_000136_040 Hb_000136_040 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_015884_030 Hb_015884_030 Hb_022250_170--Hb_015884_030 Hb_003847_120 Hb_003847_120 Hb_022250_170--Hb_003847_120 Hb_000042_270 Hb_000042_270 Hb_022250_170--Hb_000042_270 Hb_000679_130 Hb_000679_130 Hb_022250_170--Hb_000679_130 Hb_000034_040 Hb_000034_040 Hb_022250_170--Hb_000034_040 Hb_000768_190 Hb_000768_190 Hb_022250_170--Hb_000768_190 Hb_009421_030 Hb_009421_030 Hb_000250_080--Hb_009421_030 Hb_172256_010 Hb_172256_010 Hb_000250_080--Hb_172256_010 Hb_007348_040 Hb_007348_040 Hb_000250_080--Hb_007348_040 Hb_001486_120 Hb_001486_120 Hb_000250_080--Hb_001486_120 Hb_006882_010 Hb_006882_010 Hb_000250_080--Hb_006882_010 Hb_001433_190 Hb_001433_190 Hb_000250_080--Hb_001433_190 Hb_010436_030 Hb_010436_030 Hb_008247_010--Hb_010436_030 Hb_033834_010 Hb_033834_010 Hb_008247_010--Hb_033834_010 Hb_008247_010--Hb_004048_090 Hb_003001_150 Hb_003001_150 Hb_008247_010--Hb_003001_150 Hb_000009_210 Hb_000009_210 Hb_008247_010--Hb_000009_210 Hb_003544_100 Hb_003544_100 Hb_008247_010--Hb_003544_100 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434961 0.219656 0.135635 0 0.767651 0.883461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0787728 0.413619 0.0968846 0.457697

CAGE analysis