Hb_049884_010

Information

Type -
Description -
Location Contig49884: 155-895
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049884_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_164225_010 0.2108114978 - - -
3 Hb_011942_030 0.2171069023 - - -
4 Hb_007188_060 0.2256330966 - - -
5 Hb_004800_210 0.2284398735 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
6 Hb_114250_010 0.2349751367 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004117_250 0.2599856241 - - PREDICTED: expansin-A8-like [Populus euphratica]
8 Hb_000164_090 0.2606279987 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
9 Hb_002897_020 0.2619274472 - - phosphate transporter [Manihot esculenta]
10 Hb_115513_030 0.262422358 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
11 Hb_004524_060 0.2878991905 - - hypothetical protein VITISV_039334 [Vitis vinifera]
12 Hb_008203_020 0.2940644792 - - protein kinase, putative [Ricinus communis]
13 Hb_176121_010 0.2950952251 - - -
14 Hb_009302_010 0.304779106 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_003292_060 0.3084487466 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
16 Hb_000589_370 0.3109751034 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
17 Hb_163508_010 0.3132730154 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
18 Hb_055339_010 0.3170661578 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
19 Hb_114674_010 0.3206560209 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_000540_220 0.3229126392 - - hypothetical protein JCGZ_05605 [Jatropha curcas]

Gene co-expression network

sample Hb_049884_010 Hb_049884_010 Hb_164225_010 Hb_164225_010 Hb_049884_010--Hb_164225_010 Hb_011942_030 Hb_011942_030 Hb_049884_010--Hb_011942_030 Hb_007188_060 Hb_007188_060 Hb_049884_010--Hb_007188_060 Hb_004800_210 Hb_004800_210 Hb_049884_010--Hb_004800_210 Hb_114250_010 Hb_114250_010 Hb_049884_010--Hb_114250_010 Hb_004117_250 Hb_004117_250 Hb_049884_010--Hb_004117_250 Hb_003391_050 Hb_003391_050 Hb_164225_010--Hb_003391_050 Hb_055339_010 Hb_055339_010 Hb_164225_010--Hb_055339_010 Hb_003772_020 Hb_003772_020 Hb_164225_010--Hb_003772_020 Hb_002737_020 Hb_002737_020 Hb_164225_010--Hb_002737_020 Hb_036693_010 Hb_036693_010 Hb_164225_010--Hb_036693_010 Hb_002897_020 Hb_002897_020 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020 Hb_000540_220 Hb_000540_220 Hb_007188_060--Hb_000540_220 Hb_163508_010 Hb_163508_010 Hb_007188_060--Hb_163508_010 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_000164_090 Hb_000164_090 Hb_007188_060--Hb_000164_090 Hb_007188_060--Hb_055339_010 Hb_074184_010 Hb_074184_010 Hb_007188_060--Hb_074184_010 Hb_004800_210--Hb_011942_030 Hb_004800_210--Hb_000164_090 Hb_004800_210--Hb_002897_020 Hb_004800_210--Hb_000540_220 Hb_012052_030 Hb_012052_030 Hb_004800_210--Hb_012052_030 Hb_115513_030 Hb_115513_030 Hb_114250_010--Hb_115513_030 Hb_114674_010 Hb_114674_010 Hb_114250_010--Hb_114674_010 Hb_114250_010--Hb_008203_020 Hb_015928_020 Hb_015928_020 Hb_114250_010--Hb_015928_020 Hb_029689_010 Hb_029689_010 Hb_114250_010--Hb_029689_010 Hb_004524_060 Hb_004524_060 Hb_004117_250--Hb_004524_060 Hb_000589_370 Hb_000589_370 Hb_004117_250--Hb_000589_370 Hb_003292_060 Hb_003292_060 Hb_004117_250--Hb_003292_060 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408581 0.109085 0.0749576 0 0 0.0287407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis