Hb_049955_010

Information

Type -
Description -
Location Contig49955: 1687-2337
Sequence    

Annotation

kegg
ID egr:104434412
description uncharacterized LOC104434412
nr
ID KCW83891.1
description hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059D0F1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00742 PE=4 SV=1
Gene Ontology
ID GO:0016020
description hypothetical protein EUGRSUZ_B00742

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049955_010 0.0 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
2 Hb_185608_010 0.0545400462 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
3 Hb_162450_010 0.0608235445 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_005269_060 0.0614958653 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
5 Hb_057862_010 0.0623475118 - - protein binding protein, putative [Ricinus communis]
6 Hb_000343_070 0.0629125805 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
7 Hb_005532_080 0.0718543217 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
8 Hb_007382_110 0.072408743 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
9 Hb_011344_040 0.078582985 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_004943_020 0.0794841658 - - cationic amino acid transporter, putative [Ricinus communis]
11 Hb_166360_010 0.0800808773 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
12 Hb_068804_190 0.0807372236 - - kinase, putative [Ricinus communis]
13 Hb_010193_020 0.0841774458 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_000057_090 0.0842673049 - - hypothetical protein RCOM_1494490 [Ricinus communis]
15 Hb_001278_120 0.0867850698 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
16 Hb_011082_030 0.0879175972 - - hypothetical protein RCOM_0852210 [Ricinus communis]
17 Hb_002740_140 0.090534712 - - hypothetical protein L484_022679 [Morus notabilis]
18 Hb_007113_060 0.0948210168 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
19 Hb_011549_040 0.0965523767 - - -
20 Hb_024723_010 0.0970406275 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_049955_010 Hb_049955_010 Hb_185608_010 Hb_185608_010 Hb_049955_010--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_057862_010 Hb_057862_010 Hb_049955_010--Hb_057862_010 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_005532_080 Hb_005532_080 Hb_049955_010--Hb_005532_080 Hb_185608_010--Hb_057862_010 Hb_185608_010--Hb_162450_010 Hb_011344_040 Hb_011344_040 Hb_185608_010--Hb_011344_040 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_003858_010 Hb_003858_010 Hb_185608_010--Hb_003858_010 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_162450_010--Hb_093084_030 Hb_162450_010--Hb_057862_010 Hb_162450_010--Hb_005532_080 Hb_005269_060--Hb_000343_070 Hb_001278_120 Hb_001278_120 Hb_005269_060--Hb_001278_120 Hb_005269_060--Hb_011344_040 Hb_004943_020 Hb_004943_020 Hb_005269_060--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_005269_060--Hb_010172_040 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_057862_010--Hb_011344_040 Hb_057862_010--Hb_093084_030 Hb_000343_070--Hb_001278_120 Hb_000343_070--Hb_004943_020 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_068804_190 Hb_068804_190 Hb_005532_080--Hb_068804_190 Hb_005532_080--Hb_166360_010 Hb_011549_040 Hb_011549_040 Hb_005532_080--Hb_011549_040 Hb_005532_080--Hb_007382_110 Hb_056506_040 Hb_056506_040 Hb_005532_080--Hb_056506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.512126 1.66239 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0287655 0.966195

CAGE analysis