Hb_049958_010

Information

Type -
Description -
Location Contig49958: 1005-1765
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049958_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_059641_010 0.1531529181 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_000571_150 0.1960954303 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
4 Hb_179679_010 0.2000846969 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
5 Hb_126506_010 0.2062860645 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_169329_010 0.2071737513 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
7 Hb_000123_030 0.2166354474 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_144550_020 0.2187793029 - - -
9 Hb_003854_020 0.21971268 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
10 Hb_006420_020 0.2253397488 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_006269_040 0.2282131327 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_000936_040 0.2282563968 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
13 Hb_021576_140 0.2307414642 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
14 Hb_002370_040 0.231262097 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
15 Hb_001622_010 0.2334162927 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_003060_050 0.2336593468 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
17 Hb_018118_020 0.2348258494 - - unnamed protein product [Vitis vinifera]
18 Hb_100525_010 0.2356574196 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
19 Hb_007481_030 0.2374016224 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
20 Hb_003155_020 0.2376319867 - - Rpp4C3 [Medicago truncatula]

Gene co-expression network

sample Hb_049958_010 Hb_049958_010 Hb_059641_010 Hb_059641_010 Hb_049958_010--Hb_059641_010 Hb_000571_150 Hb_000571_150 Hb_049958_010--Hb_000571_150 Hb_179679_010 Hb_179679_010 Hb_049958_010--Hb_179679_010 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_169329_010 Hb_169329_010 Hb_049958_010--Hb_169329_010 Hb_000123_030 Hb_000123_030 Hb_049958_010--Hb_000123_030 Hb_059641_010--Hb_000571_150 Hb_059641_010--Hb_169329_010 Hb_003854_020 Hb_003854_020 Hb_059641_010--Hb_003854_020 Hb_144550_020 Hb_144550_020 Hb_059641_010--Hb_144550_020 Hb_059641_010--Hb_000123_030 Hb_006420_020 Hb_006420_020 Hb_000571_150--Hb_006420_020 Hb_100525_010 Hb_100525_010 Hb_000571_150--Hb_100525_010 Hb_006745_010 Hb_006745_010 Hb_000571_150--Hb_006745_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_006269_040 Hb_006269_040 Hb_179679_010--Hb_006269_040 Hb_000181_440 Hb_000181_440 Hb_179679_010--Hb_000181_440 Hb_079733_010 Hb_079733_010 Hb_179679_010--Hb_079733_010 Hb_003096_040 Hb_003096_040 Hb_179679_010--Hb_003096_040 Hb_003107_020 Hb_003107_020 Hb_179679_010--Hb_003107_020 Hb_162074_010 Hb_162074_010 Hb_126506_010--Hb_162074_010 Hb_155642_010 Hb_155642_010 Hb_126506_010--Hb_155642_010 Hb_003155_020 Hb_003155_020 Hb_126506_010--Hb_003155_020 Hb_009897_020 Hb_009897_020 Hb_126506_010--Hb_009897_020 Hb_123885_010 Hb_123885_010 Hb_126506_010--Hb_123885_010 Hb_001248_110 Hb_001248_110 Hb_126506_010--Hb_001248_110 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_177152_010 Hb_177152_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_013358_100 Hb_013358_100 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_000123_030--Hb_003854_020 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19332 28.6789 4.09934 13.0524 7.91079 16.6088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.2952 3.42915 0.357722

CAGE analysis