Hb_050203_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig50203: 4457-5336
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KAN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19457 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050203_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_002182_050 0.1372084887 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
3 Hb_006618_080 0.1454610576 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
4 Hb_002870_010 0.1543125042 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
5 Hb_001377_010 0.1564101927 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
6 Hb_000911_050 0.1639848405 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
7 Hb_001104_210 0.1646727626 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
8 Hb_006538_010 0.1651605783 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000487_240 0.1659394882 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
10 Hb_001514_070 0.1660125519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000276_030 0.1668753079 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_000005_230 0.169636199 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
13 Hb_000025_740 0.1701199476 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
14 Hb_001136_030 0.1728556404 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
15 Hb_003090_180 0.1734538392 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
16 Hb_000653_010 0.174352362 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
17 Hb_000032_560 0.1768029368 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
18 Hb_000393_030 0.1788789103 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_111147_010 0.1797611038 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005211_090 0.1800184923 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_050203_010 Hb_050203_010 Hb_002182_050 Hb_002182_050 Hb_050203_010--Hb_002182_050 Hb_006618_080 Hb_006618_080 Hb_050203_010--Hb_006618_080 Hb_002870_010 Hb_002870_010 Hb_050203_010--Hb_002870_010 Hb_001377_010 Hb_001377_010 Hb_050203_010--Hb_001377_010 Hb_000911_050 Hb_000911_050 Hb_050203_010--Hb_000911_050 Hb_001104_210 Hb_001104_210 Hb_050203_010--Hb_001104_210 Hb_000487_240 Hb_000487_240 Hb_002182_050--Hb_000487_240 Hb_159015_010 Hb_159015_010 Hb_002182_050--Hb_159015_010 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_002182_050--Hb_000032_560 Hb_005064_040 Hb_005064_040 Hb_002182_050--Hb_005064_040 Hb_116478_010 Hb_116478_010 Hb_002182_050--Hb_116478_010 Hb_000347_230 Hb_000347_230 Hb_006618_080--Hb_000347_230 Hb_000005_230 Hb_000005_230 Hb_006618_080--Hb_000005_230 Hb_007313_010 Hb_007313_010 Hb_006618_080--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_006618_080--Hb_000723_240 Hb_000589_100 Hb_000589_100 Hb_006618_080--Hb_000589_100 Hb_003734_120 Hb_003734_120 Hb_006618_080--Hb_003734_120 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_001136_030 Hb_001136_030 Hb_002870_010--Hb_001136_030 Hb_002870_010--Hb_001104_210 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180 Hb_001377_010--Hb_001136_030 Hb_001377_010--Hb_001104_210 Hb_001377_010--Hb_000911_050 Hb_001377_010--Hb_001514_070 Hb_001377_010--Hb_003090_180 Hb_000797_030 Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040 Hb_001104_210--Hb_001136_030 Hb_001104_210--Hb_003090_180 Hb_004881_060 Hb_004881_060 Hb_001104_210--Hb_004881_060 Hb_000025_740 Hb_000025_740 Hb_001104_210--Hb_000025_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.82703 0.435108 1.5724 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.361562 5.1233 0.667609

CAGE analysis