Hb_050229_010

Information

Type -
Description -
Location Contig50229: 11847-14182
Sequence    

Annotation

kegg
ID rcu:RCOM_1278050
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002527641.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID A2A1A0
description S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1
trembl
ID B9SNS2
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_1278050 PE=3 SV=1
Gene Ontology
ID GO:0045431
description s-norcoclaurine synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45903: 12696-14041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050229_010 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_164945_030 0.1394460079 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000163_170 0.1416475173 - - -
4 Hb_000789_160 0.1689760456 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
5 Hb_001856_260 0.1705966295 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
6 Hb_002020_010 0.1722206395 - - kinase-like protein [Corylus avellana]
7 Hb_000237_060 0.1772672217 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
8 Hb_146036_010 0.1780291157 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
9 Hb_003607_090 0.181618708 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
10 Hb_001430_040 0.1824407815 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
11 Hb_000069_150 0.1858524109 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
12 Hb_003968_030 0.1871152309 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000086_530 0.1900700584 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000071_040 0.1937713341 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
15 Hb_000186_150 0.1943427221 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
16 Hb_049438_020 0.1964848374 - - PREDICTED: peroxidase 20 [Jatropha curcas]
17 Hb_002869_090 0.1966392469 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
18 Hb_005332_160 0.1970952482 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
19 Hb_000910_030 0.1971671449 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001616_010 0.1972096598 - - hypothetical protein RCOM_1749890 [Ricinus communis]

Gene co-expression network

sample Hb_050229_010 Hb_050229_010 Hb_164945_030 Hb_164945_030 Hb_050229_010--Hb_164945_030 Hb_000163_170 Hb_000163_170 Hb_050229_010--Hb_000163_170 Hb_000789_160 Hb_000789_160 Hb_050229_010--Hb_000789_160 Hb_001856_260 Hb_001856_260 Hb_050229_010--Hb_001856_260 Hb_002020_010 Hb_002020_010 Hb_050229_010--Hb_002020_010 Hb_000237_060 Hb_000237_060 Hb_050229_010--Hb_000237_060 Hb_164945_030--Hb_002020_010 Hb_000152_730 Hb_000152_730 Hb_164945_030--Hb_000152_730 Hb_001213_060 Hb_001213_060 Hb_164945_030--Hb_001213_060 Hb_000086_510 Hb_000086_510 Hb_164945_030--Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_164945_030--Hb_085829_010 Hb_003607_090 Hb_003607_090 Hb_000163_170--Hb_003607_090 Hb_003849_170 Hb_003849_170 Hb_000163_170--Hb_003849_170 Hb_000910_030 Hb_000910_030 Hb_000163_170--Hb_000910_030 Hb_005144_150 Hb_005144_150 Hb_000163_170--Hb_005144_150 Hb_002869_090 Hb_002869_090 Hb_000163_170--Hb_002869_090 Hb_005332_160 Hb_005332_160 Hb_000163_170--Hb_005332_160 Hb_000331_630 Hb_000331_630 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_003427_030 Hb_003427_030 Hb_000789_160--Hb_003427_030 Hb_000207_060 Hb_000207_060 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000789_160--Hb_000163_170 Hb_001856_260--Hb_000237_060 Hb_000086_530 Hb_000086_530 Hb_001856_260--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_001856_260--Hb_007237_060 Hb_000327_100 Hb_000327_100 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_001856_260--Hb_000163_170 Hb_002020_010--Hb_000237_060 Hb_001091_040 Hb_001091_040 Hb_002020_010--Hb_001091_040 Hb_002020_010--Hb_000086_530 Hb_002020_010--Hb_005144_150 Hb_141096_010 Hb_141096_010 Hb_002020_010--Hb_141096_010 Hb_002020_010--Hb_001856_260 Hb_000237_060--Hb_000086_530 Hb_000237_060--Hb_007237_060 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.253244 1.45075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0775669 0.255324 0.258558

CAGE analysis