Hb_050286_020

Information

Type -
Description -
Location Contig50286: 7604-9664
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050286_020 0.0 - - -
2 Hb_165078_010 0.2374515307 - - -
3 Hb_015930_010 0.2379872263 - - uncharacterized protein LOC100499930 [Glycine max]
4 Hb_007827_020 0.2505475442 - - -
5 Hb_009486_010 0.275946326 - - -
6 Hb_000270_500 0.2760383376 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
7 Hb_001846_050 0.2762893491 - - -
8 Hb_088774_010 0.282793829 - - -
9 Hb_126838_020 0.2856544804 - - JHL22C18.7 [Jatropha curcas]
10 Hb_001675_060 0.288921887 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_094647_010 0.2916513982 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
12 Hb_105484_010 0.2955048336 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
13 Hb_007904_190 0.2979621666 - - -
14 Hb_080530_020 0.299405575 - - -
15 Hb_000831_040 0.3001429478 - - -
16 Hb_010290_020 0.3006426985 - - RAB6-interacting protein, putative [Ricinus communis]
17 Hb_000295_090 0.3014358472 - - Clathrin light chain 2 [Glycine soja]
18 Hb_057746_010 0.3018530396 - - -
19 Hb_000563_280 0.3019246944 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
20 Hb_002249_110 0.3035290845 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_050286_020 Hb_050286_020 Hb_165078_010 Hb_165078_010 Hb_050286_020--Hb_165078_010 Hb_015930_010 Hb_015930_010 Hb_050286_020--Hb_015930_010 Hb_007827_020 Hb_007827_020 Hb_050286_020--Hb_007827_020 Hb_009486_010 Hb_009486_010 Hb_050286_020--Hb_009486_010 Hb_000270_500 Hb_000270_500 Hb_050286_020--Hb_000270_500 Hb_001846_050 Hb_001846_050 Hb_050286_020--Hb_001846_050 Hb_057746_010 Hb_057746_010 Hb_165078_010--Hb_057746_010 Hb_105484_010 Hb_105484_010 Hb_165078_010--Hb_105484_010 Hb_000831_040 Hb_000831_040 Hb_165078_010--Hb_000831_040 Hb_098842_010 Hb_098842_010 Hb_165078_010--Hb_098842_010 Hb_004317_050 Hb_004317_050 Hb_165078_010--Hb_004317_050 Hb_088774_010 Hb_088774_010 Hb_015930_010--Hb_088774_010 Hb_001722_020 Hb_001722_020 Hb_015930_010--Hb_001722_020 Hb_015930_010--Hb_001846_050 Hb_015930_010--Hb_009486_010 Hb_000295_100 Hb_000295_100 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_024272_010 Hb_024272_010 Hb_007827_020--Hb_024272_010 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040 Hb_007827_020--Hb_000270_500 Hb_094647_010 Hb_094647_010 Hb_009486_010--Hb_094647_010 Hb_002205_050 Hb_002205_050 Hb_009486_010--Hb_002205_050 Hb_009486_010--Hb_088774_010 Hb_002849_040 Hb_002849_040 Hb_009486_010--Hb_002849_040 Hb_088065_010 Hb_088065_010 Hb_009486_010--Hb_088065_010 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_168343_010 Hb_168343_010 Hb_001846_050--Hb_168343_010 Hb_000445_080 Hb_000445_080 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_001846_050--Hb_094647_010 Hb_004738_050 Hb_004738_050 Hb_001846_050--Hb_004738_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.306 0.395181 0.561036 0 3.35761 18.2733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.57127 0.658869 0 2.1125

CAGE analysis