Hb_050334_010

Information

Type -
Description -
Location Contig50334: 6988-9615
Sequence    

Annotation

kegg
ID sot:102587892
description uncharacterized LOC102587892
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M1CPL9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050334_010 0.0 - - -
2 Hb_032531_010 0.0762775691 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001519_210 0.0881424255 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
4 Hb_000940_190 0.0948589438 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_099723_010 0.0973897825 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
6 Hb_002869_070 0.097535889 - - -
7 Hb_065943_010 0.1086248089 - - -
8 Hb_006157_050 0.1163137057 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_002473_140 0.1448406047 - - -
10 Hb_012295_020 0.1529363953 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
11 Hb_012071_010 0.1609503423 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
12 Hb_004212_040 0.1669090739 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_043792_020 0.1759202542 - - Retrotransposon gag protein [Medicago truncatula]
14 Hb_159938_010 0.1950273677 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_106815_010 0.1967693343 - - hypothetical protein, conserved [Eimeria acervulina]
16 Hb_154997_010 0.201581305 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
17 Hb_006933_010 0.2051014965 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_088410_010 0.2101334477 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_004124_010 0.2201651184 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_142570_010 0.2220990902 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_050334_010 Hb_050334_010 Hb_032531_010 Hb_032531_010 Hb_050334_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_002869_070 Hb_002869_070 Hb_050334_010--Hb_002869_070 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010 Hb_032531_010--Hb_000940_190 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_001519_210--Hb_012295_020 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_001519_210--Hb_002869_070 Hb_000940_190--Hb_099723_010 Hb_000940_190--Hb_065943_010 Hb_000940_190--Hb_006157_050 Hb_000940_190--Hb_002869_070 Hb_099723_010--Hb_065943_010 Hb_099723_010--Hb_006157_050 Hb_099723_010--Hb_002869_070 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_002869_070--Hb_006157_050 Hb_065943_010--Hb_006157_050 Hb_065943_010--Hb_002869_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.349234 0.170598 0.578232

CAGE analysis