Hb_050495_010

Information

Type -
Description -
Location Contig50495: 980-1530
Sequence    

Annotation

kegg
ID rcu:RCOM_0683570
description heat-shock protein, putative
nr
ID XP_002529170.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID Q9SYG1
description 17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1
trembl
ID B9ST51
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0683570 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050495_010 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_167316_010 0.2077126691 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
3 Hb_189237_010 0.222144745 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_144951_010 0.2234663741 - - putative reverse transcriptase [Oryza sativa Japonica Group]
5 Hb_116685_010 0.2238151966 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_001565_120 0.2240511515 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
7 Hb_004108_010 0.2394855447 - - -
8 Hb_005389_010 0.2427908929 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
9 Hb_000014_140 0.2429369733 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_033623_010 0.2479420326 - - -
11 Hb_097433_020 0.2622269229 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_001584_220 0.266281063 - - galactinol synthase [Manihot esculenta]
13 Hb_001250_120 0.2697902209 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
14 Hb_011885_010 0.2723045022 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_090459_010 0.2745536515 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
16 Hb_005203_050 0.2749633033 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_125981_010 0.275690521 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
18 Hb_008064_010 0.2763754286 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
19 Hb_054649_020 0.2783031241 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
20 Hb_000684_340 0.2809045816 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_050495_010 Hb_050495_010 Hb_167316_010 Hb_167316_010 Hb_050495_010--Hb_167316_010 Hb_189237_010 Hb_189237_010 Hb_050495_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_050495_010--Hb_144951_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_004108_010 Hb_004108_010 Hb_050495_010--Hb_004108_010 Hb_007978_020 Hb_007978_020 Hb_167316_010--Hb_007978_020 Hb_000062_500 Hb_000062_500 Hb_167316_010--Hb_000062_500 Hb_004939_020 Hb_004939_020 Hb_167316_010--Hb_004939_020 Hb_054649_020 Hb_054649_020 Hb_167316_010--Hb_054649_020 Hb_001250_120 Hb_001250_120 Hb_167316_010--Hb_001250_120 Hb_005389_010 Hb_005389_010 Hb_189237_010--Hb_005389_010 Hb_189237_010--Hb_144951_010 Hb_189237_010--Hb_004108_010 Hb_033623_010 Hb_033623_010 Hb_189237_010--Hb_033623_010 Hb_041177_010 Hb_041177_010 Hb_189237_010--Hb_041177_010 Hb_144951_010--Hb_005389_010 Hb_144951_010--Hb_004108_010 Hb_144951_010--Hb_033623_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_090459_010 Hb_090459_010 Hb_116685_010--Hb_090459_010 Hb_125981_010 Hb_125981_010 Hb_116685_010--Hb_125981_010 Hb_127819_010 Hb_127819_010 Hb_116685_010--Hb_127819_010 Hb_116685_010--Hb_001565_120 Hb_000960_010 Hb_000960_010 Hb_116685_010--Hb_000960_010 Hb_155642_010 Hb_155642_010 Hb_116685_010--Hb_155642_010 Hb_001565_120--Hb_090459_010 Hb_001565_120--Hb_127819_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_004108_010--Hb_033623_010 Hb_004108_010--Hb_005389_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923112 10.6005 0.0474363 0.207113 1.68249 3.73018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.220694 0.19824

CAGE analysis