Hb_050514_010

Information

Type -
Description -
Location Contig50514: 5368-9180
Sequence    

Annotation

kegg
ID egr:104426359
description uncharacterized protein At5g01610-like
nr
ID ADR71307.1
description hypothetical protein 29 [Hevea brasiliensis]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID I3NMS0
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46033: 5351-8222
cDNA
(Sanger)
(ID:Location)		 017_J14.ab1: 5754-8222

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050514_010 0.0 - - hypothetical protein 29 [Hevea brasiliensis]
2 Hb_000260_030 0.0524825347 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
3 Hb_000827_050 0.0581797078 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_001300_150 0.0694024984 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
5 Hb_003728_060 0.072921167 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
6 Hb_004109_170 0.0735442603 - - PREDICTED: probable ribokinase [Jatropha curcas]
7 Hb_000465_160 0.0739158152 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
8 Hb_004162_130 0.0759136753 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009339_030 0.0775535055 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
10 Hb_000236_040 0.0785593414 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
11 Hb_002871_190 0.0792510267 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
12 Hb_000175_340 0.0811261038 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
13 Hb_003813_030 0.0820922672 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
14 Hb_011519_010 0.0855388236 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
15 Hb_003304_020 0.0866647575 - - Polyadenylate-binding protein RBP47C [Glycine soja]
16 Hb_002600_090 0.0872965455 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000205_090 0.0876277784 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
18 Hb_002799_110 0.0890301809 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
19 Hb_000985_030 0.0894070706 - - PREDICTED: RRP15-like protein [Populus euphratica]
20 Hb_000120_960 0.0894497784 - - isocitrate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_050514_010 Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_050514_010--Hb_000260_030 Hb_000827_050 Hb_000827_050 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000260_030--Hb_000827_050 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_000827_050--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_001799_210 Hb_001799_210 Hb_000465_160--Hb_001799_210 Hb_001009_270 Hb_001009_270 Hb_000465_160--Hb_001009_270 Hb_000465_160--Hb_000260_030 Hb_003177_030 Hb_003177_030 Hb_000465_160--Hb_003177_030 Hb_000465_160--Hb_004109_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.0293 32.2637 76.2394 53.3629 43.4184 47.0411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.4271 86.4289 112.474 42.9764 51.191

CAGE analysis