Hb_050514_020

Information

Type -
Description -
Location Contig50514: 14487-15131
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13320g
description POPTRDRAFT_907261; hypothetical protein
nr
ID XP_012089781.1
description PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
swissprot
ID O80920
description Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1
trembl
ID A0A067JS58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 032_I18.ab1: 14212-14743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050514_020 0.0 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
2 Hb_003470_100 0.0987201282 - - protein binding protein, putative [Ricinus communis]
3 Hb_000934_260 0.1086933155 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_005000_060 0.1235468157 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
5 Hb_001999_260 0.123859167 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
6 Hb_009545_070 0.1239620473 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
7 Hb_000637_070 0.1271972641 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
8 Hb_000146_030 0.1333759964 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
9 Hb_006583_030 0.1337381143 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
10 Hb_004855_070 0.1425751271 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
11 Hb_004208_090 0.1427425153 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_003664_030 0.143486905 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
13 Hb_005074_050 0.1435094548 - - PREDICTED: myosin-6-like [Jatropha curcas]
14 Hb_004007_170 0.1449282683 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_137600_010 0.1450656623 - - 50S ribosomal protein L1p, putative [Ricinus communis]
16 Hb_001047_180 0.1462424213 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000322_040 0.1464740316 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
18 Hb_004324_120 0.1467602021 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
19 Hb_000302_230 0.1467765391 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000031_100 0.146827389 - - amine oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_050514_020 Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_050514_020--Hb_003470_100 Hb_000934_260 Hb_000934_260 Hb_050514_020--Hb_000934_260 Hb_005000_060 Hb_005000_060 Hb_050514_020--Hb_005000_060 Hb_001999_260 Hb_001999_260 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_000637_070 Hb_000637_070 Hb_050514_020--Hb_000637_070 Hb_004007_170 Hb_004007_170 Hb_003470_100--Hb_004007_170 Hb_004855_070 Hb_004855_070 Hb_003470_100--Hb_004855_070 Hb_003470_100--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_003470_100--Hb_004208_090 Hb_001047_180 Hb_001047_180 Hb_003470_100--Hb_001047_180 Hb_000934_260--Hb_004208_090 Hb_000934_260--Hb_000637_070 Hb_000322_040 Hb_000322_040 Hb_000934_260--Hb_000322_040 Hb_000934_260--Hb_001999_260 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_005000_060--Hb_001999_260 Hb_000146_030 Hb_000146_030 Hb_005000_060--Hb_000146_030 Hb_148146_010 Hb_148146_010 Hb_005000_060--Hb_148146_010 Hb_005000_060--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_005000_060--Hb_006583_030 Hb_001999_260--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_001999_260--Hb_006681_020 Hb_001999_260--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_001999_260--Hb_004117_150 Hb_009545_070--Hb_001047_180 Hb_009545_070--Hb_006583_030 Hb_003680_060 Hb_003680_060 Hb_009545_070--Hb_003680_060 Hb_000302_230 Hb_000302_230 Hb_009545_070--Hb_000302_230 Hb_009545_070--Hb_003470_100 Hb_000637_070--Hb_001999_260 Hb_000637_070--Hb_004208_090 Hb_001975_050 Hb_001975_050 Hb_000637_070--Hb_001975_050 Hb_000637_070--Hb_003470_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05352 3.50472 12.9967 2.84383 0.686598 0.73239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.999207 1.2138 0.126138 0.52495 9.77842

CAGE analysis