Hb_050686_010

Information

Type -
Description -
Location Contig50686: 15-311
Sequence    

Annotation

kegg
ID rcu:RCOM_0173800
description hypothetical protein
nr
ID XP_002534630.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6J5K9
description Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=1 SV=4
trembl
ID B9T8R1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0173800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050686_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_114984_010 0.1660398778 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006483_010 0.1681293658 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000366_190 0.1732103127 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
5 Hb_000040_050 0.1862065365 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
6 Hb_120662_010 0.1879452305 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
7 Hb_000329_420 0.1907097074 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_003177_010 0.1908213196 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
9 Hb_009693_030 0.1916414615 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_105427_010 0.1952727053 - - -
11 Hb_009485_020 0.1958994956 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
12 Hb_162378_010 0.2019713597 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
13 Hb_000886_060 0.2035673539 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
14 Hb_000497_230 0.2047543317 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
15 Hb_000215_260 0.2050126315 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
16 Hb_073973_160 0.2058387879 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
17 Hb_015026_060 0.2064097659 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
18 Hb_001279_330 0.2078519977 - - Protein bem46, putative [Ricinus communis]
19 Hb_004376_030 0.2093058125 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
20 Hb_000116_460 0.2094701708 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_050686_010 Hb_050686_010 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_006483_010 Hb_006483_010 Hb_050686_010--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_050686_010--Hb_000366_190 Hb_000040_050 Hb_000040_050 Hb_050686_010--Hb_000040_050 Hb_120662_010 Hb_120662_010 Hb_050686_010--Hb_120662_010 Hb_000329_420 Hb_000329_420 Hb_050686_010--Hb_000329_420 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_001731_020 Hb_001731_020 Hb_114984_010--Hb_001731_020 Hb_000997_410 Hb_000997_410 Hb_114984_010--Hb_000997_410 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_000749_110 Hb_000749_110 Hb_006483_010--Hb_000749_110 Hb_006483_010--Hb_000366_190 Hb_015026_060 Hb_015026_060 Hb_006483_010--Hb_015026_060 Hb_000261_520 Hb_000261_520 Hb_006483_010--Hb_000261_520 Hb_005271_080 Hb_005271_080 Hb_006483_010--Hb_005271_080 Hb_009119_030 Hb_009119_030 Hb_000366_190--Hb_009119_030 Hb_020805_010 Hb_020805_010 Hb_000366_190--Hb_020805_010 Hb_000062_030 Hb_000062_030 Hb_000366_190--Hb_000062_030 Hb_009485_020 Hb_009485_020 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000366_190--Hb_000749_110 Hb_099698_010 Hb_099698_010 Hb_000040_050--Hb_099698_010 Hb_030627_040 Hb_030627_040 Hb_000040_050--Hb_030627_040 Hb_004712_110 Hb_004712_110 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_120662_010--Hb_030627_040 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.697 29.5475 31.1265 80.602 154.38 74.9542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3669 3.93273 19.6835 18.4153 3.25047

CAGE analysis