Hb_050806_010

Information

Type -
Description -
Location Contig50806: 13844-16234
Sequence    

Annotation

kegg
ID cit:102625059
description ubiquitin-conjugating enzyme E2-17 kDa-like
nr
ID XP_012074154.1
description PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
swissprot
ID P35135
description Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067KVN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09535 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2-17 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46187: 14085-16786 , PASA_asmbl_46188: 14102-16307 , PASA_asmbl_46189: 14940-15322 , PASA_asmbl_46190: 16375-16738
cDNA
(Sanger)
(ID:Location)		 008_F14.ab1: 14102-16786 , 026_A19.ab1: 14206-16784 , 026_G03.ab1: 16375-16738 , 031_P03.ab1: 14101-16775 , 040_B15.ab1: 14101-16778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050806_010 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
2 Hb_000027_150 0.0801785634 - - mitochondrial carrier protein, putative [Ricinus communis]
3 Hb_029904_040 0.0887872321 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
4 Hb_152910_020 0.091196408 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
5 Hb_005663_120 0.0917311901 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
6 Hb_007192_100 0.0928934509 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
7 Hb_005527_040 0.0939309553 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
8 Hb_004449_200 0.094220492 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
9 Hb_006569_100 0.0978091115 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
10 Hb_010402_050 0.0981487891 - - -
11 Hb_002774_050 0.098370349 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
12 Hb_020419_020 0.0987385218 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_007317_160 0.0987560092 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
14 Hb_068056_030 0.0995726514 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
15 Hb_001005_080 0.1008362907 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_001155_040 0.1033525996 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
17 Hb_001314_040 0.1044114319 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
18 Hb_006452_040 0.1058918018 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
19 Hb_000087_130 0.1063606417 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
20 Hb_032969_030 0.1068429103 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_050806_010 Hb_050806_010 Hb_000027_150 Hb_000027_150 Hb_050806_010--Hb_000027_150 Hb_029904_040 Hb_029904_040 Hb_050806_010--Hb_029904_040 Hb_152910_020 Hb_152910_020 Hb_050806_010--Hb_152910_020 Hb_005663_120 Hb_005663_120 Hb_050806_010--Hb_005663_120 Hb_007192_100 Hb_007192_100 Hb_050806_010--Hb_007192_100 Hb_005527_040 Hb_005527_040 Hb_050806_010--Hb_005527_040 Hb_001687_040 Hb_001687_040 Hb_000027_150--Hb_001687_040 Hb_000012_100 Hb_000012_100 Hb_000027_150--Hb_000012_100 Hb_006573_220 Hb_006573_220 Hb_000027_150--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_000027_150--Hb_000181_300 Hb_004449_200 Hb_004449_200 Hb_000027_150--Hb_004449_200 Hb_029904_040--Hb_152910_020 Hb_001005_080 Hb_001005_080 Hb_029904_040--Hb_001005_080 Hb_000389_080 Hb_000389_080 Hb_029904_040--Hb_000389_080 Hb_029904_040--Hb_004449_200 Hb_000364_030 Hb_000364_030 Hb_029904_040--Hb_000364_030 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_152910_020--Hb_001005_080 Hb_152910_020--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_152910_020--Hb_000115_230 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_005663_120--Hb_005527_040 Hb_005663_120--Hb_000389_080 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_007192_100--Hb_000115_230 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_001519_030 Hb_001519_030 Hb_005527_040--Hb_001519_030 Hb_006569_100 Hb_006569_100 Hb_005527_040--Hb_006569_100 Hb_005527_040--Hb_001005_080 Hb_005527_040--Hb_004449_200 Hb_000122_020 Hb_000122_020 Hb_005527_040--Hb_000122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.92 71.7044 95.3571 264.723 59.4935 122.784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
534.572 578.612 402.103 98.7327 112.529

CAGE analysis