Hb_050847_040

Information

Type -
Description -
Location Contig50847: 22961-33313
Sequence    

Annotation

kegg
ID rcu:RCOM_0690420
description hypothetical protein
nr
ID XP_012091091.1
description PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S4I4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46206: 22883-33223 , PASA_asmbl_46207: 30081-30564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050847_040 0.0 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
2 Hb_004330_020 0.1014887731 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
3 Hb_001439_210 0.1100097787 - - EXS family protein [Populus trichocarpa]
4 Hb_004545_080 0.1109783056 - - protein with unknown function [Ricinus communis]
5 Hb_001488_290 0.1137100056 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_000200_330 0.1177795415 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
7 Hb_003894_060 0.125602197 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002876_200 0.1257643576 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
9 Hb_000649_330 0.1266318121 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
10 Hb_001001_120 0.1274871591 - - protein phosphatase, putative [Ricinus communis]
11 Hb_000086_180 0.1277645049 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
12 Hb_003175_070 0.1284051502 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
13 Hb_001001_090 0.1311138491 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
14 Hb_150651_020 0.1311726887 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_000968_060 0.1319807745 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
16 Hb_005214_070 0.1340742319 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
17 Hb_004052_180 0.1360145706 - - PREDICTED: protein COBRA-like [Jatropha curcas]
18 Hb_002488_010 0.1372077259 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_005000_010 0.138675567 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
20 Hb_004705_070 0.1388471331 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_050847_040 Hb_050847_040 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_001488_290 Hb_001488_290 Hb_050847_040--Hb_001488_290 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060 Hb_005000_010 Hb_005000_010 Hb_004330_020--Hb_005000_010 Hb_002675_080 Hb_002675_080 Hb_004330_020--Hb_002675_080 Hb_007765_130 Hb_007765_130 Hb_004330_020--Hb_007765_130 Hb_000635_050 Hb_000635_050 Hb_004330_020--Hb_000635_050 Hb_000042_050 Hb_000042_050 Hb_004330_020--Hb_000042_050 Hb_000968_060 Hb_000968_060 Hb_001439_210--Hb_000968_060 Hb_000649_330 Hb_000649_330 Hb_001439_210--Hb_000649_330 Hb_003849_120 Hb_003849_120 Hb_001439_210--Hb_003849_120 Hb_001221_390 Hb_001221_390 Hb_001439_210--Hb_001221_390 Hb_001439_210--Hb_004545_080 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_003050_360 Hb_003050_360 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_002876_200 Hb_002876_200 Hb_001488_290--Hb_002876_200 Hb_000086_180 Hb_000086_180 Hb_001488_290--Hb_000086_180 Hb_004586_040 Hb_004586_040 Hb_001488_290--Hb_004586_040 Hb_002999_030 Hb_002999_030 Hb_001488_290--Hb_002999_030 Hb_001141_050 Hb_001141_050 Hb_001488_290--Hb_001141_050 Hb_022693_110 Hb_022693_110 Hb_000200_330--Hb_022693_110 Hb_000200_330--Hb_004545_080 Hb_001104_150 Hb_001104_150 Hb_000200_330--Hb_001104_150 Hb_000200_330--Hb_000689_050 Hb_000200_330--Hb_002942_140 Hb_001663_130 Hb_001663_130 Hb_003894_060--Hb_001663_130 Hb_003683_030 Hb_003683_030 Hb_003894_060--Hb_003683_030 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_000093_140 Hb_000093_140 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82573 5.99077 23.6602 16.9544 5.19535 3.40489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.524184 0.446892 0.92423 8.26152 15.1738

CAGE analysis