Hb_050847_050

Information

Type -
Description -
Location Contig50847: 35655-38992
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09250g
description hypothetical protein
nr
ID XP_012091089.1
description PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46209: 35629-38990 , PASA_asmbl_46210: 35742-38990 , PASA_asmbl_46211: 36991-37254
cDNA
(Sanger)
(ID:Location)		 008_P08.ab1: 37750-38965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050847_050 0.0 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
2 Hb_006588_060 0.0758290379 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
3 Hb_000000_230 0.0767820167 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
4 Hb_002471_090 0.0818858353 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
5 Hb_004781_010 0.0827554952 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
6 Hb_000510_340 0.082798464 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
7 Hb_007257_060 0.0838913701 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
8 Hb_011224_160 0.0846309987 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_000347_450 0.084741579 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
10 Hb_000521_240 0.0854200068 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
11 Hb_164390_010 0.0863718294 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
12 Hb_000484_130 0.0864971264 - - splicing factor, putative [Ricinus communis]
13 Hb_000008_420 0.0870022508 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
14 Hb_001221_110 0.0875383833 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
15 Hb_003528_050 0.0875553079 - - protein transporter, putative [Ricinus communis]
16 Hb_000490_060 0.0879994157 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
17 Hb_000173_280 0.0898757005 - - Speckle-type POZ protein, putative [Ricinus communis]
18 Hb_000402_150 0.0908630331 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
19 Hb_002456_010 0.0917443525 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
20 Hb_000617_230 0.0930558879 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_050847_050 Hb_050847_050 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_012092_050 Hb_012092_050 Hb_006588_060--Hb_012092_050 Hb_000000_230--Hb_006588_060 Hb_000521_240 Hb_000521_240 Hb_000000_230--Hb_000521_240 Hb_000699_150 Hb_000699_150 Hb_000000_230--Hb_000699_150 Hb_000490_060 Hb_000490_060 Hb_000000_230--Hb_000490_060 Hb_000086_420 Hb_000086_420 Hb_000000_230--Hb_000086_420 Hb_002471_090--Hb_000521_240 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_010775_040 Hb_010775_040 Hb_004781_010--Hb_010775_040 Hb_029243_030 Hb_029243_030 Hb_004781_010--Hb_029243_030 Hb_000078_120 Hb_000078_120 Hb_004781_010--Hb_000078_120 Hb_000917_230 Hb_000917_230 Hb_004781_010--Hb_000917_230 Hb_006452_100 Hb_006452_100 Hb_004781_010--Hb_006452_100 Hb_023001_040 Hb_023001_040 Hb_004781_010--Hb_023001_040 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_007257_060--Hb_012092_050 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_007257_060--Hb_000008_420 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10589 14.2633 12.438 9.45971 5.18127 6.55073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.88749 12.7915 8.50015 16.9861 8.84047

CAGE analysis