Hb_050898_030

Information

Type -
Description -
Location Contig50898: 37551-37877
Sequence    

Annotation

kegg
ID rcu:RCOM_0916650
description hypothetical protein
nr
ID XP_002530991.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0916650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_E22.ab1: 37325-37941 , 007_M24.ab1: 37325-37940 , 015_O01.ab1: 37325-37929 , 038_M23.ab1: 37325-37941 , 043_O09.ab1: 37325-37941 , 044_O11.ab1: 37325-37929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050898_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002918_270 0.0655129042 - - PREDICTED: protein E6-like [Populus euphratica]
3 Hb_020738_010 0.0784309051 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
4 Hb_007122_020 0.0914902263 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_015292_020 0.0917736693 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001136_160 0.0925900492 - - catalytic, putative [Ricinus communis]
7 Hb_001025_130 0.0926124812 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
8 Hb_012132_050 0.0944508185 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
9 Hb_004531_130 0.0992206198 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
10 Hb_007904_280 0.0998036692 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
11 Hb_002902_060 0.1030789827 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
12 Hb_001110_060 0.106438729 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
13 Hb_001408_080 0.1065536586 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_001709_090 0.1082967511 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
15 Hb_000333_140 0.1084190225 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_000861_060 0.1086592289 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
17 Hb_001709_120 0.1087631752 - - hypothetical protein RCOM_1313640 [Ricinus communis]
18 Hb_001789_230 0.1096860088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001056_040 0.1107434265 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
20 Hb_000586_110 0.1112054219 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_050898_030 Hb_050898_030 Hb_002918_270 Hb_002918_270 Hb_050898_030--Hb_002918_270 Hb_020738_010 Hb_020738_010 Hb_050898_030--Hb_020738_010 Hb_007122_020 Hb_007122_020 Hb_050898_030--Hb_007122_020 Hb_015292_020 Hb_015292_020 Hb_050898_030--Hb_015292_020 Hb_001136_160 Hb_001136_160 Hb_050898_030--Hb_001136_160 Hb_001025_130 Hb_001025_130 Hb_050898_030--Hb_001025_130 Hb_001789_230 Hb_001789_230 Hb_002918_270--Hb_001789_230 Hb_005648_020 Hb_005648_020 Hb_002918_270--Hb_005648_020 Hb_002918_270--Hb_015292_020 Hb_003466_010 Hb_003466_010 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_011574_020 Hb_011574_020 Hb_020738_010--Hb_011574_020 Hb_059275_010 Hb_059275_010 Hb_020738_010--Hb_059275_010 Hb_001794_040 Hb_001794_040 Hb_020738_010--Hb_001794_040 Hb_000012_350 Hb_000012_350 Hb_020738_010--Hb_000012_350 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_007122_020--Hb_001136_160 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_015292_020--Hb_001025_130 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_015292_020--Hb_007122_020 Hb_001898_040 Hb_001898_040 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_001136_040 Hb_009783_010 Hb_009783_010 Hb_001136_160--Hb_009783_010 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_001136_160--Hb_012132_050 Hb_001025_130--Hb_001709_120 Hb_006483_070 Hb_006483_070 Hb_001025_130--Hb_006483_070 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61774 124.634 466.024 944.529 1.9779 3.89361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 35.7564 208.123

CAGE analysis