Hb_050953_010

Information

Type -
Description -
Location Contig50953: 28-819
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_012458238.1
description PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061G9I3
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_027657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050953_010 0.0 - - PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
2 Hb_000390_110 0.2168895951 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
3 Hb_000622_240 0.2181603816 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
4 Hb_005344_030 0.2295268564 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
5 Hb_001579_240 0.2343987392 - - galactinol synthase [Manihot esculenta]
6 Hb_001435_020 0.2464734522 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
7 Hb_000429_100 0.2544838215 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
8 Hb_000107_570 0.2575331433 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
9 Hb_000028_110 0.2618508351 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
10 Hb_004117_350 0.2624672734 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
11 Hb_000788_020 0.2669266257 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
12 Hb_001490_030 0.2692129285 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
13 Hb_003734_110 0.2705977638 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
14 Hb_002304_080 0.2732947447 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
15 Hb_004346_030 0.2746767144 - - sucrose phosphate phosphatase, putative [Ricinus communis]
16 Hb_007831_020 0.2800127559 - - conserved hypothetical protein [Ricinus communis]
17 Hb_091194_010 0.2823261586 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
18 Hb_000164_140 0.2826543745 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_001889_010 0.2842878916 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
20 Hb_007520_010 0.2852636138 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]

Gene co-expression network

sample Hb_050953_010 Hb_050953_010 Hb_000390_110 Hb_000390_110 Hb_050953_010--Hb_000390_110 Hb_000622_240 Hb_000622_240 Hb_050953_010--Hb_000622_240 Hb_005344_030 Hb_005344_030 Hb_050953_010--Hb_005344_030 Hb_001579_240 Hb_001579_240 Hb_050953_010--Hb_001579_240 Hb_001435_020 Hb_001435_020 Hb_050953_010--Hb_001435_020 Hb_000429_100 Hb_000429_100 Hb_050953_010--Hb_000429_100 Hb_000008_360 Hb_000008_360 Hb_000390_110--Hb_000008_360 Hb_002836_120 Hb_002836_120 Hb_000390_110--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000390_110--Hb_000622_240 Hb_000390_110--Hb_001435_020 Hb_014834_130 Hb_014834_130 Hb_000390_110--Hb_014834_130 Hb_000107_570 Hb_000107_570 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_005846_030 Hb_005846_030 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_000622_240--Hb_001435_020 Hb_000164_140 Hb_000164_140 Hb_000622_240--Hb_000164_140 Hb_006132_030 Hb_006132_030 Hb_005344_030--Hb_006132_030 Hb_002918_050 Hb_002918_050 Hb_005344_030--Hb_002918_050 Hb_000052_020 Hb_000052_020 Hb_005344_030--Hb_000052_020 Hb_000429_090 Hb_000429_090 Hb_005344_030--Hb_000429_090 Hb_005344_030--Hb_000622_240 Hb_091194_010 Hb_091194_010 Hb_005344_030--Hb_091194_010 Hb_004117_350 Hb_004117_350 Hb_001579_240--Hb_004117_350 Hb_007520_010 Hb_007520_010 Hb_001579_240--Hb_007520_010 Hb_002843_070 Hb_002843_070 Hb_001579_240--Hb_002843_070 Hb_002471_100 Hb_002471_100 Hb_001579_240--Hb_002471_100 Hb_007831_020 Hb_007831_020 Hb_001579_240--Hb_007831_020 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_001435_020--Hb_005846_030 Hb_001136_060 Hb_001136_060 Hb_000429_100--Hb_001136_060 Hb_000429_100--Hb_091194_010 Hb_000429_100--Hb_001712_020 Hb_000429_100--Hb_001435_020 Hb_010582_010 Hb_010582_010 Hb_000429_100--Hb_010582_010 Hb_000429_100--Hb_003349_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11887 0 0.159367 0.0251535 0.029846 0.108547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.478757 0.107554 0.0971868 0.0217746 0.539209

CAGE analysis