Hb_050964_020

Information

Type transcription factor
Description TF Family: TAZ
Location Contig50964: 7272-9610
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00260g
description TAZ zinc finger family protein
nr
ID XP_011012295.1
description PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
swissprot
ID Q9C5X9
description Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2
trembl
ID B9N5C8
description TAZ zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s00260g PE=4 SV=1
Gene Ontology
ID GO:0003712
description histone acetyltransferase hac1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050964_020 0.0 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
2 Hb_005410_010 0.1112856514 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
3 Hb_000853_370 0.1115479973 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
4 Hb_003507_020 0.1130584303 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
5 Hb_002405_020 0.1135350347 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_002149_040 0.1151683223 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001628_110 0.1229328099 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
8 Hb_003913_100 0.1230291244 - - copper amine oxidase, putative [Ricinus communis]
9 Hb_012654_020 0.1251629377 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001776_080 0.1267741978 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_002078_040 0.1278404219 - - protein with unknown function [Ricinus communis]
12 Hb_001846_080 0.1295118841 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
13 Hb_003627_020 0.1296038422 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
14 Hb_000038_130 0.1311195754 - - -
15 Hb_000483_370 0.1356538739 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000172_530 0.1359999642 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
17 Hb_005016_030 0.136158774 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
18 Hb_001635_220 0.1377456102 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
19 Hb_154381_050 0.138156606 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000320_440 0.1389243201 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_050964_020 Hb_050964_020 Hb_005410_010 Hb_005410_010 Hb_050964_020--Hb_005410_010 Hb_000853_370 Hb_000853_370 Hb_050964_020--Hb_000853_370 Hb_003507_020 Hb_003507_020 Hb_050964_020--Hb_003507_020 Hb_002405_020 Hb_002405_020 Hb_050964_020--Hb_002405_020 Hb_002149_040 Hb_002149_040 Hb_050964_020--Hb_002149_040 Hb_001628_110 Hb_001628_110 Hb_050964_020--Hb_001628_110 Hb_012654_020 Hb_012654_020 Hb_005410_010--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_005410_010--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_005410_010--Hb_154381_050 Hb_005410_010--Hb_002149_040 Hb_001846_080 Hb_001846_080 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_000853_370--Hb_003507_020 Hb_003627_020 Hb_003627_020 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_007178_010 Hb_007178_010 Hb_000853_370--Hb_007178_010 Hb_000853_370--Hb_154381_050 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003507_020--Hb_003627_020 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_002405_020--Hb_002149_040 Hb_000771_160 Hb_000771_160 Hb_002405_020--Hb_000771_160 Hb_001357_190 Hb_001357_190 Hb_002405_020--Hb_001357_190 Hb_001016_060 Hb_001016_060 Hb_002405_020--Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_002405_020--Hb_006173_020 Hb_002405_020--Hb_005410_010 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_001628_110--Hb_002172_030 Hb_001628_110--Hb_154381_050 Hb_001628_110--Hb_005410_010 Hb_001628_110--Hb_043637_010 Hb_001628_110--Hb_003507_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57931 1.33366 0.0281766 0.820118 10.1327 8.13608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89118 4.1424 2.16023 0.829804 0

CAGE analysis