Hb_051055_010

Information

Type -
Description -
Location Contig51055: 421-609
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051055_010 0.0 - - -
2 Hb_020712_050 0.0980633463 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
3 Hb_000733_150 0.1614292481 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
4 Hb_002793_080 0.1636989922 - - ribonuclease t2, putative [Ricinus communis]
5 Hb_036537_010 0.1945982459 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000003_850 0.2970486686 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
7 Hb_003058_250 0.2979810741 - - hypothetical protein RCOM_0006440 [Ricinus communis]
8 Hb_034905_010 0.3011131197 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
9 Hb_000042_180 0.3036273497 - - -
10 Hb_001242_010 0.314531183 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
11 Hb_176472_010 0.3166966709 - - BnaC01g33060D [Brassica napus]
12 Hb_000545_160 0.3346697833 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
13 Hb_000110_390 0.3424065677 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
14 Hb_001141_290 0.3501470602 - - -
15 Hb_003360_050 0.3539664168 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_001268_320 0.3551388563 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
17 Hb_001235_090 0.3720172126 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
18 Hb_168319_020 0.3723433818 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010377_020 0.3756307851 - - -
20 Hb_134708_010 0.3851790758 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]

Gene co-expression network

sample Hb_051055_010 Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_051055_010--Hb_020712_050 Hb_000733_150 Hb_000733_150 Hb_051055_010--Hb_000733_150 Hb_002793_080 Hb_002793_080 Hb_051055_010--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_051055_010--Hb_036537_010 Hb_000003_850 Hb_000003_850 Hb_051055_010--Hb_000003_850 Hb_003058_250 Hb_003058_250 Hb_051055_010--Hb_003058_250 Hb_020712_050--Hb_002793_080 Hb_020712_050--Hb_000733_150 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_000042_180 Hb_000042_180 Hb_020712_050--Hb_000042_180 Hb_000733_150--Hb_002793_080 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_000733_150--Hb_034905_010 Hb_002793_080--Hb_036537_010 Hb_002793_080--Hb_000042_180 Hb_002793_080--Hb_034905_010 Hb_176472_010 Hb_176472_010 Hb_036537_010--Hb_176472_010 Hb_004316_090 Hb_004316_090 Hb_036537_010--Hb_004316_090 Hb_036537_010--Hb_020712_050 Hb_001163_140 Hb_001163_140 Hb_000003_850--Hb_001163_140 Hb_000003_850--Hb_020712_050 Hb_000003_850--Hb_000042_180 Hb_000003_850--Hb_003058_250 Hb_000003_850--Hb_002793_080 Hb_003058_250--Hb_000733_150 Hb_003058_250--Hb_002793_080 Hb_003058_250--Hb_036537_010 Hb_009449_050 Hb_009449_050 Hb_003058_250--Hb_009449_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 7.26009 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 6.62939 0.712333 0

CAGE analysis