Hb_051257_010

Information

Type -
Description -
Location Contig51257: 219-719
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46379: 641-873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051257_010 0.0 - - -
2 Hb_164010_050 0.0874462333 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
3 Hb_000889_100 0.1023290185 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
4 Hb_000684_260 0.1148115863 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
5 Hb_134429_010 0.1228083269 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000094_290 0.1287076046 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
7 Hb_010003_010 0.1299237393 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
8 Hb_007786_030 0.1319547457 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
9 Hb_002486_050 0.1338319769 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_000926_340 0.1363482559 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_002122_010 0.1379935002 - - -
12 Hb_000622_110 0.1401516637 - - cmp-sialic acid transporter, putative [Ricinus communis]
13 Hb_005062_110 0.1412869641 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
14 Hb_000152_190 0.1425049513 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
15 Hb_004064_040 0.1442571746 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
16 Hb_005170_010 0.1459426908 - - -
17 Hb_010655_020 0.146202931 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
18 Hb_005064_010 0.1464149589 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
19 Hb_004126_040 0.1466832781 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000503_020 0.1475301108 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_051257_010 Hb_051257_010 Hb_164010_050 Hb_164010_050 Hb_051257_010--Hb_164010_050 Hb_000889_100 Hb_000889_100 Hb_051257_010--Hb_000889_100 Hb_000684_260 Hb_000684_260 Hb_051257_010--Hb_000684_260 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_000094_290 Hb_000094_290 Hb_051257_010--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_051257_010--Hb_010003_010 Hb_000866_070 Hb_000866_070 Hb_164010_050--Hb_000866_070 Hb_000000_330 Hb_000000_330 Hb_164010_050--Hb_000000_330 Hb_000258_220 Hb_000258_220 Hb_164010_050--Hb_000258_220 Hb_074399_010 Hb_074399_010 Hb_164010_050--Hb_074399_010 Hb_000503_020 Hb_000503_020 Hb_164010_050--Hb_000503_020 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000889_100--Hb_000094_290 Hb_008566_040 Hb_008566_040 Hb_000684_260--Hb_008566_040 Hb_000684_260--Hb_000889_100 Hb_002960_150 Hb_002960_150 Hb_000684_260--Hb_002960_150 Hb_007786_030 Hb_007786_030 Hb_000684_260--Hb_007786_030 Hb_000684_260--Hb_000622_350 Hb_050912_010 Hb_050912_010 Hb_134429_010--Hb_050912_010 Hb_002871_140 Hb_002871_140 Hb_134429_010--Hb_002871_140 Hb_000071_150 Hb_000071_150 Hb_134429_010--Hb_000071_150 Hb_000664_020 Hb_000664_020 Hb_134429_010--Hb_000664_020 Hb_005064_010 Hb_005064_010 Hb_134429_010--Hb_005064_010 Hb_000173_060 Hb_000173_060 Hb_000094_290--Hb_000173_060 Hb_000300_090 Hb_000300_090 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000622_350 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_000094_290--Hb_010003_010 Hb_010003_010--Hb_000889_100 Hb_000077_290 Hb_000077_290 Hb_010003_010--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_010003_010--Hb_000230_180 Hb_005170_010 Hb_005170_010 Hb_010003_010--Hb_005170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5871 15.483 52.9887 81.8671 13.4454 43.6539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99987 12.3211 9.09177 25.1609 25.3641

CAGE analysis