Hb_051407_010

Information

Type -
Description -
Location Contig51407: 3721-4193
Sequence    

Annotation

kegg
ID rcu:RCOM_0143720
description protein farnesyltransferase alpha subunit, putative (EC:2.5.1.59)
nr
ID XP_002534116.1
description protein farnesyltransferase alpha subunit, putative [Ricinus communis]
swissprot
ID Q9LX33
description Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
trembl
ID B9T797
description Protein farnesyltransferase alpha subunit, putative OS=Ricinus communis GN=RCOM_0143720 PE=4 SV=1
Gene Ontology
ID GO:0005953
description protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46414: 4153-4378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051407_010 0.0 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
2 Hb_002805_070 0.1041032664 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
3 Hb_001484_120 0.1194618331 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
4 Hb_007904_220 0.1260053489 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
5 Hb_109168_010 0.126575381 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
6 Hb_010436_020 0.1273730135 - - Dicer-like protein 4 [Morus notabilis]
7 Hb_034299_040 0.1279133813 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_010436_030 0.1284643786 - - Ribonuclease III, putative [Ricinus communis]
9 Hb_005205_020 0.1289783573 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
10 Hb_049675_010 0.1320803048 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000743_050 0.1345308007 - - unnamed protein product [Vitis vinifera]
12 Hb_090804_010 0.1346819514 - - ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000048_140 0.1354040651 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
14 Hb_000077_130 0.1362678009 - - PREDICTED: callose synthase 12 [Jatropha curcas]
15 Hb_025814_010 0.1367307062 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
16 Hb_001102_150 0.1384969577 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
17 Hb_000424_240 0.1399756105 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
18 Hb_004440_100 0.1413143769 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
19 Hb_028639_010 0.1418788162 - - transporter, putative [Ricinus communis]
20 Hb_000739_220 0.1423717932 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_051407_010 Hb_051407_010 Hb_002805_070 Hb_002805_070 Hb_051407_010--Hb_002805_070 Hb_001484_120 Hb_001484_120 Hb_051407_010--Hb_001484_120 Hb_007904_220 Hb_007904_220 Hb_051407_010--Hb_007904_220 Hb_109168_010 Hb_109168_010 Hb_051407_010--Hb_109168_010 Hb_010436_020 Hb_010436_020 Hb_051407_010--Hb_010436_020 Hb_034299_040 Hb_034299_040 Hb_051407_010--Hb_034299_040 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_039253_010 Hb_039253_010 Hb_002805_070--Hb_039253_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_067345_010 Hb_067345_010 Hb_001484_120--Hb_067345_010 Hb_001484_120--Hb_002805_070 Hb_000048_140 Hb_000048_140 Hb_001484_120--Hb_000048_140 Hb_002196_020 Hb_002196_020 Hb_001484_120--Hb_002196_020 Hb_005883_050 Hb_005883_050 Hb_001484_120--Hb_005883_050 Hb_152079_010 Hb_152079_010 Hb_001484_120--Hb_152079_010 Hb_005205_020 Hb_005205_020 Hb_007904_220--Hb_005205_020 Hb_025012_010 Hb_025012_010 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_002067_150 Hb_002067_150 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_001504_160 Hb_001504_160 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_109168_010--Hb_000048_140 Hb_049675_010 Hb_049675_010 Hb_010436_020--Hb_049675_010 Hb_000122_130 Hb_000122_130 Hb_010436_020--Hb_000122_130 Hb_034271_030 Hb_034271_030 Hb_010436_020--Hb_034271_030 Hb_010436_030 Hb_010436_030 Hb_010436_020--Hb_010436_030 Hb_001019_060 Hb_001019_060 Hb_010436_020--Hb_001019_060 Hb_012490_040 Hb_012490_040 Hb_010436_020--Hb_012490_040 Hb_002759_280 Hb_002759_280 Hb_034299_040--Hb_002759_280 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_000398_190 Hb_000398_190 Hb_034299_040--Hb_000398_190 Hb_001252_080 Hb_001252_080 Hb_034299_040--Hb_001252_080 Hb_034299_040--Hb_109168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5602 9.26707 10.883 17.3241 61.7584 100.256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2952 16.7374 51.8039 48.9368 18.8962

CAGE analysis