Hb_051424_010

Information

Type -
Description -
Location Contig51424: 1307-2533
Sequence    

Annotation

kegg
ID rcu:RCOM_1102290
description hypothetical protein
nr
ID XP_012077348.1
description PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
swissprot
ID O80543
description Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2
trembl
ID A0A067LB51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17239 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase at1g22800

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051424_010 0.0 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
2 Hb_051437_010 0.1219084305 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_106415_010 0.1403926801 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
4 Hb_008029_020 0.1540060327 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
5 Hb_006663_090 0.1592067419 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
6 Hb_181328_010 0.1609541163 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_115477_010 0.1611394219 - - Protein dom-3, putative [Ricinus communis]
8 Hb_002084_010 0.1664256365 - - hypothetical protein VITISV_017990 [Vitis vinifera]
9 Hb_181441_010 0.1704435774 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_070469_010 0.1709908547 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
11 Hb_121467_010 0.1739518012 - - tubulin-specific chaperone E, putative [Ricinus communis]
12 Hb_009119_020 0.1741729353 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
13 Hb_019053_010 0.1745348089 - - -
14 Hb_001386_140 0.1788063064 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_000991_070 0.1791911986 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
16 Hb_001623_300 0.1795499398 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
17 Hb_001252_200 0.1821358433 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
18 Hb_000130_190 0.1847117043 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_028227_010 0.1854879226 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
20 Hb_007026_040 0.1858170627 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_051424_010 Hb_051424_010 Hb_051437_010 Hb_051437_010 Hb_051424_010--Hb_051437_010 Hb_106415_010 Hb_106415_010 Hb_051424_010--Hb_106415_010 Hb_008029_020 Hb_008029_020 Hb_051424_010--Hb_008029_020 Hb_006663_090 Hb_006663_090 Hb_051424_010--Hb_006663_090 Hb_181328_010 Hb_181328_010 Hb_051424_010--Hb_181328_010 Hb_115477_010 Hb_115477_010 Hb_051424_010--Hb_115477_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_178041_010 Hb_178041_010 Hb_051437_010--Hb_178041_010 Hb_009119_040 Hb_009119_040 Hb_051437_010--Hb_009119_040 Hb_051437_010--Hb_008029_020 Hb_009119_020 Hb_009119_020 Hb_051437_010--Hb_009119_020 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_002235_120 Hb_002235_120 Hb_008029_020--Hb_002235_120 Hb_000130_190 Hb_000130_190 Hb_008029_020--Hb_000130_190 Hb_019053_020 Hb_019053_020 Hb_008029_020--Hb_019053_020 Hb_001508_020 Hb_001508_020 Hb_008029_020--Hb_001508_020 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_002400_330 Hb_002400_330 Hb_181328_010--Hb_002400_330 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_115107_010 Hb_115107_010 Hb_115477_010--Hb_115107_010 Hb_168973_010 Hb_168973_010 Hb_115477_010--Hb_168973_010 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.55441 15.9235 18.3513 34.6603 17.0502 85.9039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99412 7.91094 8.47111 13.529 12.5201

CAGE analysis