Hb_051663_010

Information

Type -
Description -
Location Contig51663: 8027-15857
Sequence    

Annotation

kegg
ID rcu:RCOM_0814340
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_002518813.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID Q84MA9
description Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana GN=At1g60630 PE=2 SV=1
trembl
ID B9RY46
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0814340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive leucine-rich repeat receptor-like serine threonine-protein kinase at1g60630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46531: 7065-7331 , PASA_asmbl_46532: 7780-8462 , PASA_asmbl_46533: 13280-13774 , PASA_asmbl_46534: 8575-15853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051663_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_001516_010 0.0636178533 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
3 Hb_000000_390 0.0752187459 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
4 Hb_111985_100 0.0768662784 - - beta-galactosidase, putative [Ricinus communis]
5 Hb_000922_200 0.0790403575 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
6 Hb_032920_020 0.0831501925 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_009486_050 0.0881625313 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
8 Hb_007617_010 0.0891005827 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_001079_060 0.0912047797 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
10 Hb_001095_020 0.0917268089 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
11 Hb_000156_110 0.0943963805 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
12 Hb_002609_120 0.0945119298 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
13 Hb_001514_030 0.0957976671 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
14 Hb_001541_130 0.0963283003 - - GDSL esterase/lipase [Morus notabilis]
15 Hb_000009_270 0.0967438854 - - Calmodulin, putative [Ricinus communis]
16 Hb_001674_010 0.0975191503 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
17 Hb_000005_240 0.0982590544 - - Shugoshin-1, putative [Ricinus communis]
18 Hb_012395_240 0.0984962126 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
19 Hb_000748_120 0.0994613369 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
20 Hb_001638_200 0.1003453636 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]

Gene co-expression network

sample Hb_051663_010 Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_001516_010--Hb_111985_100 Hb_002835_310 Hb_002835_310 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_000538_090 Hb_000538_090 Hb_000000_390--Hb_000538_090 Hb_004635_120 Hb_004635_120 Hb_000000_390--Hb_004635_120 Hb_012395_240 Hb_012395_240 Hb_000000_390--Hb_012395_240 Hb_002078_330 Hb_002078_330 Hb_000000_390--Hb_002078_330 Hb_001638_200 Hb_001638_200 Hb_000000_390--Hb_001638_200 Hb_001541_130 Hb_001541_130 Hb_111985_100--Hb_001541_130 Hb_111985_100--Hb_032920_020 Hb_001095_020 Hb_001095_020 Hb_111985_100--Hb_001095_020 Hb_002150_090 Hb_002150_090 Hb_111985_100--Hb_002150_090 Hb_000951_150 Hb_000951_150 Hb_000922_200--Hb_000951_150 Hb_000922_200--Hb_000000_390 Hb_000922_200--Hb_004635_120 Hb_000922_200--Hb_001638_200 Hb_000922_200--Hb_012395_240 Hb_001674_010 Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_000009_270 Hb_000009_270 Hb_032920_020--Hb_000009_270 Hb_002609_120 Hb_002609_120 Hb_032920_020--Hb_002609_120 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_032920_020--Hb_001638_200 Hb_032920_020--Hb_002150_090 Hb_009486_050--Hb_002609_120 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_001021_120 Hb_001021_120 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_009486_050--Hb_001638_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129548 0.450246 13.9738 13.6966 0 0.008054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0759441 0.0867133 1.17688 11.3426

CAGE analysis