Hb_051900_020

Information

Type -
Description -
Location Contig51900: 19424-23445
Sequence    

Annotation

kegg
ID rcu:RCOM_1574750
description Casbene synthase, chloroplast precursor, putative (EC:4.2.3.8)
nr
ID BAJ53216.1
description JHL22C18.7 [Jatropha curcas]
swissprot
ID B9RI00
description Probable terpene synthase 6 OS=Ricinus communis GN=TPS6 PE=3 SV=1
trembl
ID E6NUA6
description JHL22C18.7 protein OS=Jatropha curcas GN=JHL22C18.7 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46644: 19751-20915 , PASA_asmbl_46645: 20933-23538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051900_020 0.0 - - JHL22C18.7 [Jatropha curcas]
2 Hb_160479_010 0.0607025128 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_010068_010 0.0634544895 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
4 Hb_033691_010 0.0668657101 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
5 Hb_002235_330 0.0745647685 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
6 Hb_000566_060 0.0756517349 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004317_020 0.0814154001 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
8 Hb_000926_240 0.0916683443 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
9 Hb_041332_010 0.1135583281 - - DNA binding protein, putative [Ricinus communis]
10 Hb_036116_010 0.1145788957 - - JHL22C18.10 [Jatropha curcas]
11 Hb_090521_010 0.1146124104 - - Major allergen Pru ar, putative [Ricinus communis]
12 Hb_002157_110 0.1146372831 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
13 Hb_000471_130 0.1147056125 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002217_010 0.1147521899 - - Peroxiredoxin, putative [Ricinus communis]
15 Hb_004899_240 0.1147820656 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005333_090 0.1150273063 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_003038_020 0.1150968516 - - unnamed protein product [Coffea canephora]
18 Hb_001002_010 0.1151309171 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003687_060 0.11516805 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006663_120 0.1152549616 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_051900_020 Hb_051900_020 Hb_160479_010 Hb_160479_010 Hb_051900_020--Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_051900_020--Hb_010068_010 Hb_033691_010 Hb_033691_010 Hb_051900_020--Hb_033691_010 Hb_002235_330 Hb_002235_330 Hb_051900_020--Hb_002235_330 Hb_000566_060 Hb_000566_060 Hb_051900_020--Hb_000566_060 Hb_004317_020 Hb_004317_020 Hb_051900_020--Hb_004317_020 Hb_160479_010--Hb_010068_010 Hb_160479_010--Hb_033691_010 Hb_000926_240 Hb_000926_240 Hb_160479_010--Hb_000926_240 Hb_160479_010--Hb_004317_020 Hb_000935_060 Hb_000935_060 Hb_160479_010--Hb_000935_060 Hb_010068_010--Hb_000926_240 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_004317_020 Hb_010068_010--Hb_000566_060 Hb_033691_010--Hb_000926_240 Hb_001369_510 Hb_001369_510 Hb_033691_010--Hb_001369_510 Hb_041332_010 Hb_041332_010 Hb_033691_010--Hb_041332_010 Hb_002235_330--Hb_160479_010 Hb_002235_330--Hb_010068_010 Hb_002235_330--Hb_033691_010 Hb_002235_330--Hb_000566_060 Hb_002235_330--Hb_004317_020 Hb_000566_060--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000566_060--Hb_034858_010 Hb_000566_060--Hb_000926_240 Hb_000566_060--Hb_160479_010 Hb_004317_020--Hb_034858_010 Hb_004317_020--Hb_000926_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.10019 7.23337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.222505 0

CAGE analysis