Hb_051997_010

Information

Type -
Description -
Location Contig51997: 6658-7351
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051997_010 0.0 - - -
2 Hb_000556_130 0.2294636705 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
3 Hb_007382_090 0.2355624659 - - protein binding protein, putative [Ricinus communis]
4 Hb_007617_040 0.2443203595 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
5 Hb_000663_070 0.2534487857 - - cyclin A, putative [Ricinus communis]
6 Hb_000111_440 0.2542505108 - - -
7 Hb_002321_040 0.2573523113 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
8 Hb_007432_010 0.263970557 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
9 Hb_003740_030 0.2642265379 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
10 Hb_000034_150 0.2656000283 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
11 Hb_005332_130 0.2728653129 - - Mavicyanin, putative [Ricinus communis]
12 Hb_000302_350 0.2742808243 - - polygalacturonase, putative [Ricinus communis]
13 Hb_001329_190 0.2772710557 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_005048_110 0.28077138 - - -
15 Hb_000808_120 0.2846804991 - - -
16 Hb_013344_010 0.287201308 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
17 Hb_004884_170 0.288378365 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
18 Hb_126648_010 0.2887175456 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
19 Hb_159327_010 0.2891331272 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
20 Hb_010436_080 0.2910266309 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]

Gene co-expression network

sample Hb_051997_010 Hb_051997_010 Hb_000556_130 Hb_000556_130 Hb_051997_010--Hb_000556_130 Hb_007382_090 Hb_007382_090 Hb_051997_010--Hb_007382_090 Hb_007617_040 Hb_007617_040 Hb_051997_010--Hb_007617_040 Hb_000663_070 Hb_000663_070 Hb_051997_010--Hb_000663_070 Hb_000111_440 Hb_000111_440 Hb_051997_010--Hb_000111_440 Hb_002321_040 Hb_002321_040 Hb_051997_010--Hb_002321_040 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_005332_130 Hb_005332_130 Hb_007382_090--Hb_005332_130 Hb_003740_030 Hb_003740_030 Hb_007382_090--Hb_003740_030 Hb_000031_330 Hb_000031_330 Hb_007382_090--Hb_000031_330 Hb_007382_090--Hb_000111_440 Hb_003119_040 Hb_003119_040 Hb_007382_090--Hb_003119_040 Hb_005217_070 Hb_005217_070 Hb_007382_090--Hb_005217_070 Hb_012016_050 Hb_012016_050 Hb_007617_040--Hb_012016_050 Hb_128392_010 Hb_128392_010 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_007617_040--Hb_003813_110 Hb_001247_060 Hb_001247_060 Hb_007617_040--Hb_001247_060 Hb_000034_150 Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007432_010 Hb_007432_010 Hb_000111_440--Hb_007432_010 Hb_000111_440--Hb_003740_030 Hb_000111_440--Hb_005332_130 Hb_126648_010 Hb_126648_010 Hb_002321_040--Hb_126648_010 Hb_011609_040 Hb_011609_040 Hb_002321_040--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_002321_040--Hb_005048_110 Hb_013834_010 Hb_013834_010 Hb_002321_040--Hb_013834_010 Hb_000640_050 Hb_000640_050 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160655 0.0538428 0.937651 0.737119 0.117641 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.230525 0 0.0963515 0

CAGE analysis