Hb_051997_020

Information

Type -
Description -
Location Contig51997: 6883-7904
Sequence    

Annotation

kegg
ID vvi:100266863
description uncharacterized LOC100266863
nr
ID XP_002271667.2
description PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051997_020 0.0 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
2 Hb_001454_070 0.1862170444 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
3 Hb_009620_100 0.1882901209 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
4 Hb_010789_020 0.1948934223 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
5 Hb_010381_010 0.195314796 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000197_200 0.1965474635 - - Sec14 cytosolic factor, putative [Ricinus communis]
7 Hb_000009_610 0.2016843537 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
8 Hb_000120_250 0.2032107776 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
9 Hb_000622_200 0.2064335858 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_001950_070 0.2081410721 - - cyclin d, putative [Ricinus communis]
11 Hb_171718_020 0.2109215919 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
12 Hb_001369_470 0.2120762291 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
13 Hb_005144_210 0.2148553239 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001863_160 0.2149191278 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
15 Hb_003038_250 0.2151898133 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
16 Hb_163968_010 0.2157159146 - - vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_011915_040 0.2161471372 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
18 Hb_002685_150 0.2167068004 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_023765_020 0.2183516632 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
20 Hb_001214_190 0.2186623158 - - hypothetical protein JCGZ_25001 [Jatropha curcas]

Gene co-expression network

sample Hb_051997_020 Hb_051997_020 Hb_001454_070 Hb_001454_070 Hb_051997_020--Hb_001454_070 Hb_009620_100 Hb_009620_100 Hb_051997_020--Hb_009620_100 Hb_010789_020 Hb_010789_020 Hb_051997_020--Hb_010789_020 Hb_010381_010 Hb_010381_010 Hb_051997_020--Hb_010381_010 Hb_000197_200 Hb_000197_200 Hb_051997_020--Hb_000197_200 Hb_000009_610 Hb_000009_610 Hb_051997_020--Hb_000009_610 Hb_023765_020 Hb_023765_020 Hb_001454_070--Hb_023765_020 Hb_001252_240 Hb_001252_240 Hb_001454_070--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_001454_070--Hb_000369_010 Hb_100790_010 Hb_100790_010 Hb_001454_070--Hb_100790_010 Hb_000086_700 Hb_000086_700 Hb_001454_070--Hb_000086_700 Hb_171718_020 Hb_171718_020 Hb_001454_070--Hb_171718_020 Hb_000916_070 Hb_000916_070 Hb_009620_100--Hb_000916_070 Hb_000868_050 Hb_000868_050 Hb_009620_100--Hb_000868_050 Hb_000227_190 Hb_000227_190 Hb_009620_100--Hb_000227_190 Hb_026549_010 Hb_026549_010 Hb_009620_100--Hb_026549_010 Hb_000184_210 Hb_000184_210 Hb_009620_100--Hb_000184_210 Hb_164945_010 Hb_164945_010 Hb_010789_020--Hb_164945_010 Hb_000580_100 Hb_000580_100 Hb_010789_020--Hb_000580_100 Hb_011671_480 Hb_011671_480 Hb_010789_020--Hb_011671_480 Hb_010789_020--Hb_010381_010 Hb_039021_010 Hb_039021_010 Hb_010789_020--Hb_039021_010 Hb_000622_200 Hb_000622_200 Hb_010789_020--Hb_000622_200 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_000836_300 Hb_000836_300 Hb_010381_010--Hb_000836_300 Hb_007786_030 Hb_007786_030 Hb_010381_010--Hb_007786_030 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_010381_010--Hb_000622_200 Hb_002783_220 Hb_002783_220 Hb_000197_200--Hb_002783_220 Hb_001950_070 Hb_001950_070 Hb_000197_200--Hb_001950_070 Hb_000526_010 Hb_000526_010 Hb_000197_200--Hb_000526_010 Hb_002333_070 Hb_002333_070 Hb_000197_200--Hb_002333_070 Hb_000566_050 Hb_000566_050 Hb_000197_200--Hb_000566_050 Hb_094121_010 Hb_094121_010 Hb_000197_200--Hb_094121_010 Hb_004800_150 Hb_004800_150 Hb_000009_610--Hb_004800_150 Hb_011344_070 Hb_011344_070 Hb_000009_610--Hb_011344_070 Hb_010812_070 Hb_010812_070 Hb_000009_610--Hb_010812_070 Hb_000320_050 Hb_000320_050 Hb_000009_610--Hb_000320_050 Hb_004957_020 Hb_004957_020 Hb_000009_610--Hb_004957_020 Hb_000009_610--Hb_164945_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123707 0.213039 0.739721 0.415786 0.0624171 0.235575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14517 0.114038 0.191249 0.190525 0

CAGE analysis