Hb_052113_020

Information

Type -
Description -
Location Contig52113: 4110-5497
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID KDO64062.1
description hypothetical protein CISIN_1g022501mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052113_020 0.0 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
2 Hb_000506_130 0.1166468856 - - DGCR14-related family protein [Populus trichocarpa]
3 Hb_000245_270 0.1222684382 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
4 Hb_002042_190 0.1251858418 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
5 Hb_003800_010 0.1361376084 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
6 Hb_029238_020 0.1374675951 - - PREDICTED: expansin-like A1 [Jatropha curcas]
7 Hb_004143_050 0.1395874575 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
8 Hb_000181_080 0.1413446563 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
9 Hb_017434_020 0.1423061423 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
10 Hb_002239_030 0.1478803956 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
11 Hb_024857_010 0.1518017671 - - glutaredoxin 2.1 [Hevea brasiliensis]
12 Hb_116349_090 0.1520671154 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
13 Hb_004531_010 0.154080971 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
14 Hb_012760_060 0.1546149614 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
15 Hb_087468_010 0.1548454163 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
16 Hb_000506_140 0.1580777307 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
17 Hb_004607_180 0.1584284241 - - conserved hypothetical protein [Ricinus communis]
18 Hb_125884_010 0.1630337799 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
19 Hb_183539_010 0.164208447 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
20 Hb_000087_180 0.1646940334 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_052113_020 Hb_052113_020 Hb_000506_130 Hb_000506_130 Hb_052113_020--Hb_000506_130 Hb_000245_270 Hb_000245_270 Hb_052113_020--Hb_000245_270 Hb_002042_190 Hb_002042_190 Hb_052113_020--Hb_002042_190 Hb_003800_010 Hb_003800_010 Hb_052113_020--Hb_003800_010 Hb_029238_020 Hb_029238_020 Hb_052113_020--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_052113_020--Hb_004143_050 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_000506_130--Hb_029238_020 Hb_000506_130--Hb_004143_050 Hb_000805_150 Hb_000805_150 Hb_000245_270--Hb_000805_150 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_174829_040 Hb_174829_040 Hb_002042_190--Hb_174829_040 Hb_000142_010 Hb_000142_010 Hb_002042_190--Hb_000142_010 Hb_000172_300 Hb_000172_300 Hb_002042_190--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_002042_190--Hb_116349_050 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_000252_190 Hb_000252_190 Hb_003800_010--Hb_000252_190 Hb_003800_010--Hb_004143_050 Hb_087468_010 Hb_087468_010 Hb_003800_010--Hb_087468_010 Hb_000417_230 Hb_000417_230 Hb_003800_010--Hb_000417_230 Hb_005687_060 Hb_005687_060 Hb_003800_010--Hb_005687_060 Hb_029238_020--Hb_116349_090 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_004143_050--Hb_029238_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.312636 26.3943 1.66141 10.3757 0.107286 0.319796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.561725 0.343558 0.62471 2.14128 0.990821

CAGE analysis