Hb_052117_010

Information

Type -
Description -
Location Contig52117: 613-1706
Sequence    

Annotation

kegg
ID rcu:RCOM_0917390
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002530995.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID B9SYC6
description Kinase, putative OS=Ricinus communis GN=RCOM_0917390 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052117_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001898_020 0.0610526133 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
3 Hb_001522_040 0.0800949493 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000950_040 0.082658644 - - cation-transporting atpase plant, putative [Ricinus communis]
5 Hb_009745_010 0.0988818676 - - cellulose synthase-like protein [Populus tomentosa]
6 Hb_000997_340 0.1062837605 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_000196_010 0.1086372868 - - Patellin-5, putative [Ricinus communis]
8 Hb_000732_230 0.1107210078 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
9 Hb_115513_040 0.1177645057 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002685_030 0.1180585934 - - PREDICTED: protein SMG7L [Jatropha curcas]
11 Hb_000100_210 0.1278214806 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
12 Hb_029748_020 0.1290080661 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_014720_030 0.1294989526 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
14 Hb_001446_060 0.129990335 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_002909_100 0.1301980773 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
16 Hb_002686_210 0.1305890647 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000227_320 0.1312325585 - - unnamed protein product [Vitis vinifera]
18 Hb_001430_100 0.1330517213 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001951_240 0.1347349155 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
20 Hb_001832_210 0.1351870766 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_052117_010 Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_052117_010--Hb_001898_020 Hb_001522_040 Hb_001522_040 Hb_052117_010--Hb_001522_040 Hb_000950_040 Hb_000950_040 Hb_052117_010--Hb_000950_040 Hb_009745_010 Hb_009745_010 Hb_052117_010--Hb_009745_010 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_000196_010 Hb_000196_010 Hb_052117_010--Hb_000196_010 Hb_001898_020--Hb_001522_040 Hb_001446_060 Hb_001446_060 Hb_001898_020--Hb_001446_060 Hb_001898_020--Hb_009745_010 Hb_001898_020--Hb_000950_040 Hb_005016_020 Hb_005016_020 Hb_001898_020--Hb_005016_020 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_001522_040--Hb_009745_010 Hb_029748_020 Hb_029748_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_000732_230 Hb_000732_230 Hb_000950_040--Hb_000732_230 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_009745_010--Hb_000196_010 Hb_000363_180 Hb_000363_180 Hb_009745_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_009745_010--Hb_002909_100 Hb_000997_340--Hb_000100_210 Hb_000997_340--Hb_001522_040 Hb_000997_340--Hb_001898_020 Hb_001832_210 Hb_001832_210 Hb_000997_340--Hb_001832_210 Hb_000997_340--Hb_000950_040 Hb_000196_010--Hb_000363_180 Hb_000196_010--Hb_002909_100 Hb_000196_010--Hb_000732_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.0868 30.6671 13.6271 24.4146 2.90527 4.41064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50343 1.02479 1.23406 14.2783 16.5405

CAGE analysis