Hb_052128_010

Information

Type -
Description -
Location Contig52128: 12-497
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03560g
description POPTRDRAFT_576166; DNA topoisomerase 2 family protein
nr
ID XP_009774911.1
description PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
swissprot
ID Q5YLB4
description DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1
trembl
ID B8LLU9
description Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0005694
description dna gyrase subunit chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052128_010 0.0 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
2 Hb_054865_020 0.1051432313 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
3 Hb_001396_240 0.1082943658 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
4 Hb_001396_020 0.1156679786 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
5 Hb_004466_050 0.1167643227 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
6 Hb_002307_080 0.1226179459 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000453_030 0.1235009486 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
8 Hb_004116_160 0.124023081 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
9 Hb_004994_350 0.1244448288 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
10 Hb_001279_020 0.1246841642 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
11 Hb_000470_110 0.1260659314 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
12 Hb_001050_050 0.1285888764 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
13 Hb_011457_140 0.1287932456 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
14 Hb_000529_130 0.1310478451 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
15 Hb_029552_020 0.1314821179 - - conserved hypothetical protein [Ricinus communis]
16 Hb_089246_010 0.1326045309 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
17 Hb_005873_020 0.1363360684 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
18 Hb_001008_050 0.1364814177 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
19 Hb_000878_160 0.1431580164 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
20 Hb_000045_160 0.1441565868 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]

Gene co-expression network

sample Hb_052128_010 Hb_052128_010 Hb_054865_020 Hb_054865_020 Hb_052128_010--Hb_054865_020 Hb_001396_240 Hb_001396_240 Hb_052128_010--Hb_001396_240 Hb_001396_020 Hb_001396_020 Hb_052128_010--Hb_001396_020 Hb_004466_050 Hb_004466_050 Hb_052128_010--Hb_004466_050 Hb_002307_080 Hb_002307_080 Hb_052128_010--Hb_002307_080 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_005873_020 Hb_005873_020 Hb_054865_020--Hb_005873_020 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_000631_090 Hb_000631_090 Hb_054865_020--Hb_000631_090 Hb_004718_060 Hb_004718_060 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240 Hb_003462_060 Hb_003462_060 Hb_001396_240--Hb_003462_060 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_001396_240--Hb_004466_050 Hb_005250_010 Hb_005250_010 Hb_001396_240--Hb_005250_010 Hb_001279_020 Hb_001279_020 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_000529_130 Hb_000529_130 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_001408_030 Hb_001408_030 Hb_004466_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010 Hb_006022_010 Hb_006022_010 Hb_002307_080--Hb_006022_010 Hb_002307_080--Hb_054865_020 Hb_002307_080--Hb_000631_090 Hb_000045_160 Hb_000045_160 Hb_002307_080--Hb_000045_160 Hb_002249_020 Hb_002249_020 Hb_002307_080--Hb_002249_020 Hb_002684_020 Hb_002684_020 Hb_000453_030--Hb_002684_020 Hb_000453_030--Hb_001279_020 Hb_000453_030--Hb_001396_020 Hb_006970_020 Hb_006970_020 Hb_000453_030--Hb_006970_020 Hb_005062_060 Hb_005062_060 Hb_000453_030--Hb_005062_060 Hb_004032_320 Hb_004032_320 Hb_000453_030--Hb_004032_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.578 35.8152 54.4887 32.3067 10.2948 35.4341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09163 5.88587 11.8894 23.2443 50.9381

CAGE analysis