Hb_052139_010

Information

Type -
Description -
Location Contig52139: 1980-2664
Sequence    

Annotation

kegg
ID mdm:103454540
description glucan endo-1,3-beta-glucosidase, basic isoform-like
nr
ID XP_011039449.1
description PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID A0A067JQD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21135 PE=3 SV=1
Gene Ontology
ID GO:0016798
description glucan endo- -beta- basic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052139_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
2 Hb_001856_290 0.0597786696 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
3 Hb_031194_020 0.0704968883 - - BnaCnng13030D [Brassica napus]
4 Hb_007101_090 0.0706725946 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
5 Hb_001001_130 0.0753955561 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
6 Hb_000645_270 0.0765547432 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
7 Hb_000000_090 0.087462313 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000270_040 0.0887149992 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015807_020 0.1041793732 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_003622_050 0.1081281227 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
11 Hb_057716_010 0.1099256821 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_003947_020 0.1117771862 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
13 Hb_004459_050 0.1141806714 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005029_030 0.1147103685 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
15 Hb_004855_030 0.1150152832 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_054865_040 0.1153260422 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
17 Hb_026188_010 0.1181958305 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
18 Hb_001610_100 0.1189102587 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_001053_050 0.1194705124 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
20 Hb_000858_050 0.1209787119 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_052139_010 Hb_052139_010 Hb_001856_290 Hb_001856_290 Hb_052139_010--Hb_001856_290 Hb_031194_020 Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_007101_090 Hb_007101_090 Hb_052139_010--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_052139_010--Hb_001001_130 Hb_000645_270 Hb_000645_270 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_001856_290--Hb_007101_090 Hb_057716_010 Hb_057716_010 Hb_001856_290--Hb_057716_010 Hb_001856_290--Hb_001001_130 Hb_054865_040 Hb_054865_040 Hb_001856_290--Hb_054865_040 Hb_001856_290--Hb_031194_020 Hb_031194_020--Hb_000645_270 Hb_003622_050 Hb_003622_050 Hb_031194_020--Hb_003622_050 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050 Hb_000645_270--Hb_003622_050 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_000000_090--Hb_000645_270 Hb_000270_040 Hb_000270_040 Hb_000000_090--Hb_000270_040 Hb_000000_090--Hb_007101_090 Hb_000000_090--Hb_003622_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0399824 2.39618 1.90526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.02074 23.1888

CAGE analysis