Hb_052530_030

Information

Type -
Description -
Location Contig52530: 36266-37990
Sequence    

Annotation

kegg
ID tcc:TCM_005079
description Cytochrome P450, family 78, subfamily A, polypeptide 6
nr
ID XP_012083132.1
description PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
swissprot
ID O48927
description Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1
trembl
ID A0A067K061
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14209 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 78a3p family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46978: 36029-37774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052530_030 0.0 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
2 Hb_000072_310 0.0983638406 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
3 Hb_023675_020 0.1012790229 - - acc synthase, putative [Ricinus communis]
4 Hb_000103_280 0.1029108648 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
5 Hb_117335_020 0.1037861669 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
6 Hb_010615_010 0.1040208815 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
7 Hb_001784_010 0.105438174 - - nutrient reservoir, putative [Ricinus communis]
8 Hb_008296_010 0.1058655174 - - -
9 Hb_009230_050 0.1075761587 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
10 Hb_002639_090 0.1139063938 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
11 Hb_000499_050 0.1149757311 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_070850_010 0.116788175 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
13 Hb_170979_010 0.1172126848 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
14 Hb_007556_010 0.1173019687 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
15 Hb_001693_030 0.117843702 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
16 Hb_003938_150 0.1181328548 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
17 Hb_009393_010 0.1195775409 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
18 Hb_000592_040 0.1201990574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005588_140 0.1206046304 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000426_070 0.1206596052 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_052530_030 Hb_052530_030 Hb_000072_310 Hb_000072_310 Hb_052530_030--Hb_000072_310 Hb_023675_020 Hb_023675_020 Hb_052530_030--Hb_023675_020 Hb_000103_280 Hb_000103_280 Hb_052530_030--Hb_000103_280 Hb_117335_020 Hb_117335_020 Hb_052530_030--Hb_117335_020 Hb_010615_010 Hb_010615_010 Hb_052530_030--Hb_010615_010 Hb_001784_010 Hb_001784_010 Hb_052530_030--Hb_001784_010 Hb_005588_140 Hb_005588_140 Hb_000072_310--Hb_005588_140 Hb_002639_090 Hb_002639_090 Hb_000072_310--Hb_002639_090 Hb_000840_230 Hb_000840_230 Hb_000072_310--Hb_000840_230 Hb_000318_320 Hb_000318_320 Hb_000072_310--Hb_000318_320 Hb_107495_050 Hb_107495_050 Hb_000072_310--Hb_107495_050 Hb_023675_020--Hb_117335_020 Hb_023675_020--Hb_000103_280 Hb_023675_020--Hb_010615_010 Hb_023675_020--Hb_001784_010 Hb_008296_010 Hb_008296_010 Hb_023675_020--Hb_008296_010 Hb_009230_050 Hb_009230_050 Hb_023675_020--Hb_009230_050 Hb_000103_280--Hb_010615_010 Hb_000103_280--Hb_001784_010 Hb_000103_280--Hb_008296_010 Hb_000103_280--Hb_009230_050 Hb_070850_010 Hb_070850_010 Hb_000103_280--Hb_070850_010 Hb_000499_050 Hb_000499_050 Hb_117335_020--Hb_000499_050 Hb_000592_040 Hb_000592_040 Hb_117335_020--Hb_000592_040 Hb_117335_020--Hb_000103_280 Hb_000426_070 Hb_000426_070 Hb_117335_020--Hb_000426_070 Hb_001693_030 Hb_001693_030 Hb_117335_020--Hb_001693_030 Hb_010615_010--Hb_001784_010 Hb_010615_010--Hb_008296_010 Hb_010615_010--Hb_009230_050 Hb_010615_010--Hb_070850_010 Hb_001784_010--Hb_008296_010 Hb_001784_010--Hb_009230_050 Hb_001784_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_001784_010--Hb_007556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0866852 33.8672 0.3661 7.7747 0.322979 0.0579682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293376 0 0 0 0

CAGE analysis