Hb_052548_010

Information

Type -
Description -
Location Contig52548: 24-1848
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00320g
description hypothetical protein
nr
ID XP_012066903.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q9LHP4
description Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1
trembl
ID A0A067LPX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04538 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052548_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_002960_040 0.1725087095 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
3 Hb_065525_070 0.1802462668 - - unnamed protein product [Homo sapiens]
4 Hb_002783_070 0.1852119462 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
5 Hb_000976_130 0.1951593699 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_002030_050 0.2014451096 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
7 Hb_003327_020 0.2051776154 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
8 Hb_001213_040 0.2102406792 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
9 Hb_000992_020 0.2137120128 - - monoxygenase, putative [Ricinus communis]
10 Hb_000574_320 0.2163253305 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
11 Hb_000906_070 0.2193393891 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
12 Hb_003077_130 0.2196666763 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
13 Hb_000281_070 0.220075473 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
14 Hb_001437_120 0.2203493275 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
15 Hb_001405_230 0.2217672622 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
16 Hb_000084_140 0.2224623545 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
17 Hb_010488_010 0.2226138696 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
18 Hb_000251_050 0.2237210243 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
19 Hb_003626_080 0.2251765824 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000069_500 0.2255742546 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_052548_010 Hb_052548_010 Hb_002960_040 Hb_002960_040 Hb_052548_010--Hb_002960_040 Hb_065525_070 Hb_065525_070 Hb_052548_010--Hb_065525_070 Hb_002783_070 Hb_002783_070 Hb_052548_010--Hb_002783_070 Hb_000976_130 Hb_000976_130 Hb_052548_010--Hb_000976_130 Hb_002030_050 Hb_002030_050 Hb_052548_010--Hb_002030_050 Hb_003327_020 Hb_003327_020 Hb_052548_010--Hb_003327_020 Hb_002960_040--Hb_002783_070 Hb_002960_040--Hb_000976_130 Hb_000966_040 Hb_000966_040 Hb_002960_040--Hb_000966_040 Hb_001907_080 Hb_001907_080 Hb_002960_040--Hb_001907_080 Hb_009692_040 Hb_009692_040 Hb_002960_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_002960_040--Hb_000193_220 Hb_001109_160 Hb_001109_160 Hb_065525_070--Hb_001109_160 Hb_065525_070--Hb_000976_130 Hb_003029_140 Hb_003029_140 Hb_065525_070--Hb_003029_140 Hb_020400_020 Hb_020400_020 Hb_065525_070--Hb_020400_020 Hb_008616_040 Hb_008616_040 Hb_065525_070--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_065525_070--Hb_001250_020 Hb_021409_190 Hb_021409_190 Hb_002783_070--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_002783_070--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_002783_070--Hb_000803_240 Hb_000803_220 Hb_000803_220 Hb_002783_070--Hb_000803_220 Hb_002783_070--Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_004242_120 Hb_004242_120 Hb_002030_050--Hb_004242_120 Hb_000574_320 Hb_000574_320 Hb_002030_050--Hb_000574_320 Hb_011472_050 Hb_011472_050 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_003687_160 Hb_003687_160 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030 Hb_003327_020--Hb_065525_070 Hb_113673_010 Hb_113673_010 Hb_003327_020--Hb_113673_010 Hb_005466_010 Hb_005466_010 Hb_003327_020--Hb_005466_010 Hb_000084_140 Hb_000084_140 Hb_003327_020--Hb_000084_140 Hb_023771_020 Hb_023771_020 Hb_003327_020--Hb_023771_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120203 0.561655 0.636653 0.363128 0.645073 0.0490815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0254956 0 0.0379202 0.327573 2.23915

CAGE analysis