Hb_052761_010

Information

Type -
Description -
Location Contig52761: 23381-24966
Sequence    

Annotation

kegg
ID mus:103974471
description uncharacterized protein LOC103974471
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NIH9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_19136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052761_010 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_000739_090 0.0303846419 - - -
3 Hb_001251_030 0.1538595643 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
4 Hb_005800_040 0.1722383138 - - -
5 Hb_005867_010 0.2163215587 - - -
6 Hb_001364_020 0.2165349367 - - -
7 Hb_000038_160 0.2193386096 - - putative gag protein [Coffea canephora]
8 Hb_140049_070 0.2195097276 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002805_320 0.2202071743 - - -
10 Hb_002163_060 0.2227721113 - - -
11 Hb_013394_010 0.2437937372 - - PREDICTED: laccase-14-like [Malus domestica]
12 Hb_027393_020 0.2525510699 - - -
13 Hb_011344_080 0.2529607332 - - -
14 Hb_004324_380 0.2587159931 - - -
15 Hb_000375_380 0.2605755354 - - -
16 Hb_011978_010 0.260769534 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
17 Hb_000100_050 0.2611695015 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_000008_050 0.2634256122 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
19 Hb_007008_020 0.2754800027 - - -
20 Hb_046727_010 0.288099076 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_052761_010 Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_052761_010--Hb_000739_090 Hb_001251_030 Hb_001251_030 Hb_052761_010--Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_052761_010--Hb_005800_040 Hb_005867_010 Hb_005867_010 Hb_052761_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_052761_010--Hb_001364_020 Hb_000038_160 Hb_000038_160 Hb_052761_010--Hb_000038_160 Hb_000739_090--Hb_001251_030 Hb_000739_090--Hb_001364_020 Hb_000739_090--Hb_005800_040 Hb_000739_090--Hb_005867_010 Hb_000739_090--Hb_000038_160 Hb_001251_030--Hb_005800_040 Hb_013394_010 Hb_013394_010 Hb_001251_030--Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_001251_030--Hb_011344_080 Hb_006156_020 Hb_006156_020 Hb_001251_030--Hb_006156_020 Hb_005800_040--Hb_013394_010 Hb_005800_040--Hb_011344_080 Hb_005800_040--Hb_006156_020 Hb_005867_010--Hb_001364_020 Hb_005867_010--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_005867_010--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_005867_010--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_005867_010--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_005867_010--Hb_027393_020 Hb_001364_020--Hb_000038_160 Hb_001364_020--Hb_140049_070 Hb_001364_020--Hb_002805_320 Hb_001364_020--Hb_002163_060 Hb_001364_020--Hb_027393_020 Hb_000038_160--Hb_140049_070 Hb_000038_160--Hb_002805_320 Hb_000038_160--Hb_002163_060 Hb_000038_160--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666286 0 0 0 0.128057 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0193706 0

CAGE analysis