Hb_052764_010

Information

Type -
Description -
Location Contig52764: 6602-7511
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04320g
description POPTRDRAFT_822798; hypothetical protein
nr
ID XP_002316654.1
description hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HZ02
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s04320g PE=4 SV=1
Gene Ontology
ID GO:0006259
description ribosomal rna-processing protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47113: 8095-8496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_010 0.0 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
2 Hb_000205_220 0.0512642386 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
3 Hb_010091_040 0.0560729594 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_042141_010 0.1108435971 - - -
5 Hb_063869_010 0.1206474764 - - JHL22C18.10 [Jatropha curcas]
6 Hb_007858_030 0.1421453161 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
7 Hb_002284_040 0.1548247186 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_011344_150 0.1776061331 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_000002_280 0.178435514 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
10 Hb_007507_030 0.1951205517 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_000243_310 0.1964033479 - - lactoylglutathione lyase, putative [Ricinus communis]
12 Hb_137701_020 0.2001864563 - - putative protein kinase [Oryza sativa Japonica Group]
13 Hb_003867_030 0.2050233056 - - -
14 Hb_166828_010 0.2086084042 - - -
15 Hb_002092_140 0.209091277 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
16 Hb_002025_240 0.21506895 - - -
17 Hb_000320_170 0.2217930998 - - conserved hypothetical protein [Ricinus communis]
18 Hb_101778_010 0.2239945146 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_130579_050 0.2271345799 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
20 Hb_002836_030 0.2273987684 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_052764_010 Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_052764_010--Hb_000205_220 Hb_010091_040 Hb_010091_040 Hb_052764_010--Hb_010091_040 Hb_042141_010 Hb_042141_010 Hb_052764_010--Hb_042141_010 Hb_063869_010 Hb_063869_010 Hb_052764_010--Hb_063869_010 Hb_007858_030 Hb_007858_030 Hb_052764_010--Hb_007858_030 Hb_002284_040 Hb_002284_040 Hb_052764_010--Hb_002284_040 Hb_000205_220--Hb_010091_040 Hb_000205_220--Hb_007858_030 Hb_000205_220--Hb_063869_010 Hb_000205_220--Hb_042141_010 Hb_000205_220--Hb_002284_040 Hb_010091_040--Hb_002284_040 Hb_010091_040--Hb_007858_030 Hb_000002_280 Hb_000002_280 Hb_010091_040--Hb_000002_280 Hb_010091_040--Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_042141_010--Hb_007507_030 Hb_042141_010--Hb_063869_010 Hb_101778_010 Hb_101778_010 Hb_042141_010--Hb_101778_010 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020 Hb_063869_010--Hb_137701_020 Hb_063869_010--Hb_007507_030 Hb_004880_120 Hb_004880_120 Hb_063869_010--Hb_004880_120 Hb_000059_160 Hb_000059_160 Hb_007858_030--Hb_000059_160 Hb_007858_030--Hb_002284_040 Hb_091913_010 Hb_091913_010 Hb_007858_030--Hb_091913_010 Hb_000892_040 Hb_000892_040 Hb_002284_040--Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_002284_040--Hb_080873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.657605 0.0911164 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.331512

CAGE analysis