Hb_052764_030

Information

Type transcription factor
Description TF Family: B3
Location Contig52764: 15620-28251
Sequence    

Annotation

kegg
ID rcu:RCOM_1063050
description transcription factor, putative
nr
ID XP_012091508.1
description PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
swissprot
ID Q0D5G4
description B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=3 SV=2
trembl
ID A0A067JDQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21364 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein os07g0563300-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47114: 15695-20979 , PASA_asmbl_47115: 21022-22153 , PASA_asmbl_47118: 26338-27013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_030 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
2 Hb_000866_210 0.0781572364 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
3 Hb_009486_160 0.0856913095 - - PREDICTED: metacaspase-1 [Jatropha curcas]
4 Hb_002897_050 0.0876137572 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
5 Hb_002301_170 0.0885910292 - - MAC/Perforin domain-containing protein [Theobroma cacao]
6 Hb_001104_170 0.0996614798 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
7 Hb_000291_010 0.10511558 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
8 Hb_005389_160 0.1092275965 - - PREDICTED: casein kinase I [Jatropha curcas]
9 Hb_000512_010 0.1093907463 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
10 Hb_001862_110 0.1119018914 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_004319_070 0.1119184748 - - hypothetical protein RCOM_0852460 [Ricinus communis]
12 Hb_000373_230 0.1119712204 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_000205_240 0.1135450269 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000019_040 0.1148219463 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
15 Hb_004526_010 0.1162300741 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
16 Hb_007054_040 0.1165451279 - - PREDICTED: protein RST1 [Jatropha curcas]
17 Hb_014068_050 0.1165988849 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
18 Hb_003055_140 0.116893326 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
19 Hb_011249_060 0.1170995657 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
20 Hb_000363_120 0.1173124552 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_052764_030 Hb_052764_030 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_009486_160 Hb_009486_160 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_000866_210--Hb_002897_050 Hb_000866_210--Hb_009486_160 Hb_011631_010 Hb_011631_010 Hb_000866_210--Hb_011631_010 Hb_003055_140 Hb_003055_140 Hb_000866_210--Hb_003055_140 Hb_011249_060 Hb_011249_060 Hb_000866_210--Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_002897_050--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_002897_050--Hb_000638_280 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_000084_240 Hb_000084_240 Hb_002897_050--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002897_050--Hb_000045_260 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_002301_170--Hb_000363_120 Hb_000442_010 Hb_000442_010 Hb_001104_170--Hb_000442_010 Hb_005389_160 Hb_005389_160 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_012239_020 Hb_012239_020 Hb_000291_010--Hb_012239_020 Hb_005018_020 Hb_005018_020 Hb_000291_010--Hb_005018_020 Hb_060094_020 Hb_060094_020 Hb_000291_010--Hb_060094_020 Hb_001279_170 Hb_001279_170 Hb_000291_010--Hb_001279_170 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73173 29.0257 15.0478 7.04875 6.7632 6.65866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80356 7.34466 8.014 10.9783 5.6256

CAGE analysis