Hb_052764_040

Information

Type -
Description -
Location Contig52764: 29571-30479
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03540g
description POPTRDRAFT_197160; syntaxin 125 family protein
nr
ID XP_002305002.2
description syntaxin 125 family protein [Populus trichocarpa]
swissprot
ID O64791
description Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1
trembl
ID B9H229
description Syntaxin 125 family protein OS=Populus trichocarpa GN=POPTR_0004s03540g PE=3 SV=2
Gene Ontology
ID GO:0005886
description syntaxin-124

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_040 0.0 - - syntaxin 125 family protein [Populus trichocarpa]
2 Hb_003038_250 0.2470842675 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
3 Hb_000700_030 0.2499607301 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
4 Hb_004449_140 0.2580848438 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
5 Hb_044653_080 0.2584690267 - - Uncharacterized protein TCM_045144 [Theobroma cacao]
6 Hb_051997_020 0.2676848399 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
7 Hb_001214_190 0.2702851881 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
8 Hb_003938_170 0.2790038233 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
9 Hb_001195_180 0.2793695687 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
10 Hb_002067_010 0.2934145995 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001016_010 0.2949355502 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023765_020 0.29935185 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
13 Hb_000732_030 0.3008327361 - - conserved hypothetical protein [Ricinus communis]
14 Hb_056196_040 0.3016917583 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001454_070 0.3030189106 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
16 Hb_000197_200 0.305742818 - - Sec14 cytosolic factor, putative [Ricinus communis]
17 Hb_004453_100 0.3072451431 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_250 0.3116733145 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
19 Hb_001252_240 0.3119345445 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
20 Hb_004920_070 0.312825821 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_052764_040 Hb_052764_040 Hb_003038_250 Hb_003038_250 Hb_052764_040--Hb_003038_250 Hb_000700_030 Hb_000700_030 Hb_052764_040--Hb_000700_030 Hb_004449_140 Hb_004449_140 Hb_052764_040--Hb_004449_140 Hb_044653_080 Hb_044653_080 Hb_052764_040--Hb_044653_080 Hb_051997_020 Hb_051997_020 Hb_052764_040--Hb_051997_020 Hb_001214_190 Hb_001214_190 Hb_052764_040--Hb_001214_190 Hb_003529_180 Hb_003529_180 Hb_003038_250--Hb_003529_180 Hb_000009_220 Hb_000009_220 Hb_003038_250--Hb_000009_220 Hb_000197_200 Hb_000197_200 Hb_003038_250--Hb_000197_200 Hb_004725_030 Hb_004725_030 Hb_003038_250--Hb_004725_030 Hb_000732_030 Hb_000732_030 Hb_003038_250--Hb_000732_030 Hb_000122_010 Hb_000122_010 Hb_003038_250--Hb_000122_010 Hb_001195_180 Hb_001195_180 Hb_000700_030--Hb_001195_180 Hb_009620_090 Hb_009620_090 Hb_000700_030--Hb_009620_090 Hb_000808_120 Hb_000808_120 Hb_000700_030--Hb_000808_120 Hb_157022_030 Hb_157022_030 Hb_000700_030--Hb_157022_030 Hb_000260_650 Hb_000260_650 Hb_000700_030--Hb_000260_650 Hb_004449_140--Hb_001214_190 Hb_176472_020 Hb_176472_020 Hb_004449_140--Hb_176472_020 Hb_003430_040 Hb_003430_040 Hb_004449_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_004449_140--Hb_074792_010 Hb_003938_170 Hb_003938_170 Hb_004449_140--Hb_003938_170 Hb_002218_100 Hb_002218_100 Hb_004449_140--Hb_002218_100 Hb_004193_010 Hb_004193_010 Hb_044653_080--Hb_004193_010 Hb_092408_010 Hb_092408_010 Hb_044653_080--Hb_092408_010 Hb_002026_010 Hb_002026_010 Hb_044653_080--Hb_002026_010 Hb_000432_090 Hb_000432_090 Hb_044653_080--Hb_000432_090 Hb_001486_010 Hb_001486_010 Hb_044653_080--Hb_001486_010 Hb_001454_070 Hb_001454_070 Hb_051997_020--Hb_001454_070 Hb_009620_100 Hb_009620_100 Hb_051997_020--Hb_009620_100 Hb_010789_020 Hb_010789_020 Hb_051997_020--Hb_010789_020 Hb_010381_010 Hb_010381_010 Hb_051997_020--Hb_010381_010 Hb_051997_020--Hb_000197_200 Hb_000009_610 Hb_000009_610 Hb_051997_020--Hb_000009_610 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0624126 0.104045 0.579368 0.146872 0 0.116389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114307 0.0449468 0.16435 0 0

CAGE analysis