Hb_052764_070

Information

Type -
Description -
Location Contig52764: 40275-41732
Sequence    

Annotation

kegg
ID rcu:RCOM_1063000
description hypothetical protein
nr
ID XP_012091513.1
description PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47122: 40171-41728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_070 0.0 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
2 Hb_133799_010 0.0926084109 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001767_060 0.1397319106 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_001307_110 0.1761752864 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
5 Hb_014508_010 0.1904771475 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
6 Hb_093458_010 0.1917822162 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
7 Hb_154038_020 0.1919904795 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
8 Hb_000352_200 0.1941588867 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
9 Hb_002603_110 0.1980458949 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
10 Hb_000879_230 0.1995678108 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
11 Hb_001450_030 0.2008129051 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
12 Hb_106552_070 0.2034047501 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003602_060 0.2040956077 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
14 Hb_009780_050 0.2066072647 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
15 Hb_000116_020 0.2084300606 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
16 Hb_003181_060 0.2159207466 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
17 Hb_000318_080 0.2172391009 - - PREDICTED: la-related protein 6C [Jatropha curcas]
18 Hb_065525_120 0.2173055504 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
19 Hb_000007_200 0.2215975112 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
20 Hb_001863_070 0.2232942307 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]

Gene co-expression network

sample Hb_052764_070 Hb_052764_070 Hb_133799_010 Hb_133799_010 Hb_052764_070--Hb_133799_010 Hb_001767_060 Hb_001767_060 Hb_052764_070--Hb_001767_060 Hb_001307_110 Hb_001307_110 Hb_052764_070--Hb_001307_110 Hb_014508_010 Hb_014508_010 Hb_052764_070--Hb_014508_010 Hb_093458_010 Hb_093458_010 Hb_052764_070--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_052764_070--Hb_154038_020 Hb_133799_010--Hb_001767_060 Hb_133799_010--Hb_154038_020 Hb_133799_010--Hb_014508_010 Hb_133799_010--Hb_001307_110 Hb_033152_120 Hb_033152_120 Hb_133799_010--Hb_033152_120 Hb_001767_060--Hb_093458_010 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_065525_120 Hb_065525_120 Hb_001307_110--Hb_065525_120 Hb_000879_230 Hb_000879_230 Hb_001307_110--Hb_000879_230 Hb_002320_080 Hb_002320_080 Hb_001307_110--Hb_002320_080 Hb_009780_050 Hb_009780_050 Hb_001307_110--Hb_009780_050 Hb_000365_370 Hb_000365_370 Hb_001307_110--Hb_000365_370 Hb_000032_370 Hb_000032_370 Hb_001307_110--Hb_000032_370 Hb_000740_150 Hb_000740_150 Hb_014508_010--Hb_000740_150 Hb_029977_020 Hb_029977_020 Hb_014508_010--Hb_029977_020 Hb_004052_100 Hb_004052_100 Hb_014508_010--Hb_004052_100 Hb_001408_170 Hb_001408_170 Hb_014508_010--Hb_001408_170 Hb_001250_130 Hb_001250_130 Hb_014508_010--Hb_001250_130 Hb_093458_010--Hb_003602_060 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_001863_070 Hb_001863_070 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200 Hb_154038_020--Hb_003602_060 Hb_154038_020--Hb_065525_120 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_154038_020--Hb_093458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.501214 10.3481 30.7676 37.7884 0.232648 0.515297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1294 34.6259 6.76657 2.73565 23.4798

CAGE analysis