Hb_052764_080

Information

Type -
Description -
Location Contig52764: 44180-50081
Sequence    

Annotation

kegg
ID rcu:RCOM_1062990
description ARF GTPase activator, putative
nr
ID XP_012091514.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
swissprot
ID Q9FL69
description Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1
trembl
ID A0A067JDQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21369 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47123: 45129-45947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_080 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
2 Hb_073171_010 0.1169800005 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
3 Hb_001259_100 0.120877889 - - chloride channel-like family protein [Populus trichocarpa]
4 Hb_000977_090 0.1215556985 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
5 Hb_005183_200 0.1239754085 - - EG964 [Manihot glaziovii]
6 Hb_000429_110 0.1294411963 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
7 Hb_000720_210 0.1319420888 - - carbonyl reductase, putative [Ricinus communis]
8 Hb_004044_030 0.1395264462 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
9 Hb_002928_180 0.1458530372 - - catalase CAT1 [Manihot esculenta]
10 Hb_003430_020 0.1460888677 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
11 Hb_003453_030 0.1486169135 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
12 Hb_022501_020 0.1506628361 - - AMP dependent CoA ligase, putative [Ricinus communis]
13 Hb_002600_010 0.154803642 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
14 Hb_009581_040 0.1554788888 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
15 Hb_010174_190 0.1559309776 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
16 Hb_001401_070 0.1564468201 - - glycogenin, putative [Ricinus communis]
17 Hb_000236_110 0.1570896866 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
18 Hb_001515_050 0.1590536987 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
19 Hb_004218_160 0.1598237287 - - NBS-LRR type disease resistance protein [Medicago truncatula]
20 Hb_000418_030 0.1606364107 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]

Gene co-expression network

sample Hb_052764_080 Hb_052764_080 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_052764_080--Hb_001259_100 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_005183_200 Hb_005183_200 Hb_052764_080--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_073171_010--Hb_001259_100 Hb_000152_250 Hb_000152_250 Hb_073171_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_073171_010--Hb_015473_010 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070 Hb_001259_100--Hb_005183_200 Hb_001259_100--Hb_000429_110 Hb_004044_030 Hb_004044_030 Hb_001259_100--Hb_004044_030 Hb_010381_110 Hb_010381_110 Hb_001259_100--Hb_010381_110 Hb_004007_120 Hb_004007_120 Hb_000977_090--Hb_004007_120 Hb_003556_070 Hb_003556_070 Hb_000977_090--Hb_003556_070 Hb_000120_070 Hb_000120_070 Hb_000977_090--Hb_000120_070 Hb_073119_010 Hb_073119_010 Hb_000977_090--Hb_073119_010 Hb_002324_050 Hb_002324_050 Hb_000977_090--Hb_002324_050 Hb_003430_020 Hb_003430_020 Hb_005183_200--Hb_003430_020 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_002928_180 Hb_002928_180 Hb_000429_110--Hb_002928_180 Hb_002928_120 Hb_002928_120 Hb_000429_110--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_107543_010 Hb_107543_010 Hb_000720_210--Hb_107543_010 Hb_006316_030 Hb_006316_030 Hb_000720_210--Hb_006316_030 Hb_000720_210--Hb_000120_070 Hb_001369_070 Hb_001369_070 Hb_000720_210--Hb_001369_070 Hb_000720_210--Hb_074312_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0110987 9.09349 1.20587 4.46594 0.0207828 0.0864688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328153 0.53624 0.262879 5.69487 1.46445

CAGE analysis