Hb_052805_010

Information

Type -
Description -
Location Contig52805: 2882-5806
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03650g
description POPTRDRAFT_558071; hypothetical protein
nr
ID XP_002314179.1
description hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
swissprot
ID P48495
description Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
trembl
ID B9HPH1
description Triosephosphate isomerase OS=Populus trichocarpa GN=POPTR_0009s03650g PE=3 SV=1
Gene Ontology
ID GO:0005618
description triosephosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47138: 2909-6035
cDNA
(Sanger)
(ID:Location)		 002_C07.ab1: 2910-5604 , 016_O09.ab1: 2910-5554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052805_010 0.0 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
2 Hb_000720_040 0.0614218144 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
3 Hb_011282_060 0.0724684702 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
4 Hb_001366_370 0.0759761404 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
5 Hb_000510_300 0.0764375509 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
6 Hb_000666_100 0.0812010979 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
7 Hb_000783_010 0.0814441014 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
8 Hb_001427_160 0.0816661 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000200_020 0.0832450566 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_003994_230 0.0870796585 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
11 Hb_001799_030 0.0913281627 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
12 Hb_008970_030 0.0918783257 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000300_500 0.0920817615 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
14 Hb_005695_120 0.0921194762 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
15 Hb_007481_010 0.0930764402 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_010407_140 0.0945951166 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
17 Hb_001159_130 0.0947549975 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
18 Hb_002660_150 0.0954282497 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
19 Hb_003528_030 0.0954952699 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
20 Hb_002053_140 0.0956073191 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]

Gene co-expression network

sample Hb_052805_010 Hb_052805_010 Hb_000720_040 Hb_000720_040 Hb_052805_010--Hb_000720_040 Hb_011282_060 Hb_011282_060 Hb_052805_010--Hb_011282_060 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_000783_010 Hb_000783_010 Hb_052805_010--Hb_000783_010 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000720_040--Hb_000783_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_010407_140 Hb_010407_140 Hb_011282_060--Hb_010407_140 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_001366_370--Hb_000783_010 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_001366_370--Hb_000510_300 Hb_000510_300--Hb_000783_010 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000510_300--Hb_000720_040 Hb_004545_110 Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_003057_060 Hb_003057_060 Hb_000666_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_000666_100--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_000666_100--Hb_008616_050 Hb_000666_100--Hb_000200_020 Hb_002641_060 Hb_002641_060 Hb_000666_100--Hb_002641_060 Hb_000783_010--Hb_000200_020 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.0141 81.284 170.974 262.133 97.7466 138.196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
158.75 134.205 149.443 147.894 76.708

CAGE analysis