Hb_053073_010

Information

Type -
Description -
Location Contig53073: 1559-2144
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053073_010 0.0 - - -
2 Hb_001208_020 0.1481942309 - - -
3 Hb_002965_180 0.1951879208 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
4 Hb_001459_040 0.1967404753 - - Ankyrin repeat-containing protein [Medicago truncatula]
5 Hb_163400_010 0.1993479133 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
6 Hb_149194_010 0.2073147265 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
7 Hb_014705_010 0.2145360307 - - hypothetical protein JCGZ_21106 [Jatropha curcas]
8 Hb_004453_060 0.2148737936 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
9 Hb_000808_120 0.2192195222 - - -
10 Hb_004112_060 0.2236641459 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
11 Hb_003894_090 0.2275102484 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009372_050 0.2324654555 - - unnamed protein product [Vitis vinifera]
13 Hb_000039_080 0.234490232 - - cyclin d, putative [Ricinus communis]
14 Hb_002343_030 0.2353635324 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000172_230 0.2364578735 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
16 Hb_081228_010 0.2373791994 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
17 Hb_000532_150 0.2423916115 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
18 Hb_150573_010 0.2424669298 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
19 Hb_008643_020 0.244821407 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
20 Hb_113676_010 0.2452200037 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_053073_010 Hb_053073_010 Hb_001208_020 Hb_001208_020 Hb_053073_010--Hb_001208_020 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_001459_040 Hb_001459_040 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010 Hb_000562_010 Hb_000562_010 Hb_001208_020--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_001208_020--Hb_158296_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090 Hb_130739_010 Hb_130739_010 Hb_002965_180--Hb_130739_010 Hb_158349_010 Hb_158349_010 Hb_002965_180--Hb_158349_010 Hb_002659_110 Hb_002659_110 Hb_002965_180--Hb_002659_110 Hb_143933_010 Hb_143933_010 Hb_002965_180--Hb_143933_010 Hb_071079_060 Hb_071079_060 Hb_002965_180--Hb_071079_060 Hb_113676_010 Hb_113676_010 Hb_001459_040--Hb_113676_010 Hb_173271_010 Hb_173271_010 Hb_001459_040--Hb_173271_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_108670_010 Hb_108670_010 Hb_001459_040--Hb_108670_010 Hb_004112_060 Hb_004112_060 Hb_001459_040--Hb_004112_060 Hb_186304_010 Hb_186304_010 Hb_163400_010--Hb_186304_010 Hb_044653_010 Hb_044653_010 Hb_163400_010--Hb_044653_010 Hb_002984_020 Hb_002984_020 Hb_163400_010--Hb_002984_020 Hb_068307_010 Hb_068307_010 Hb_163400_010--Hb_068307_010 Hb_001506_030 Hb_001506_030 Hb_163400_010--Hb_001506_030 Hb_000025_800 Hb_000025_800 Hb_149194_010--Hb_000025_800 Hb_119583_030 Hb_119583_030 Hb_149194_010--Hb_119583_030 Hb_001518_050 Hb_001518_050 Hb_149194_010--Hb_001518_050 Hb_185437_010 Hb_185437_010 Hb_149194_010--Hb_185437_010 Hb_010252_010 Hb_010252_010 Hb_149194_010--Hb_010252_010 Hb_000908_030 Hb_000908_030 Hb_149194_010--Hb_000908_030 Hb_003086_160 Hb_003086_160 Hb_014705_010--Hb_003086_160 Hb_033720_030 Hb_033720_030 Hb_014705_010--Hb_033720_030 Hb_011861_130 Hb_011861_130 Hb_014705_010--Hb_011861_130 Hb_000022_080 Hb_000022_080 Hb_014705_010--Hb_000022_080 Hb_004195_070 Hb_004195_070 Hb_014705_010--Hb_004195_070 Hb_107658_010 Hb_107658_010 Hb_014705_010--Hb_107658_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.4544 290.808 589.013 1107.76 39.3397 173.047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28878 1.71597 0 0 0

CAGE analysis