Hb_053125_010

Information

Type -
Description -
Location Contig53125: 37-423
Sequence    

Annotation

kegg
ID vvi:104881508
description uncharacterized LOC104881508
nr
ID XP_010660243.1
description PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BH36
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021876 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47396: 206-473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053125_010 0.0 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
2 Hb_001485_010 0.142317811 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_102011_010 0.1440423916 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_167977_010 0.1628311922 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
5 Hb_151706_010 0.1669437132 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
6 Hb_147218_010 0.1798241485 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_065500_010 0.1846573863 - - -
8 Hb_136880_010 0.1850942803 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_012788_010 0.1892880062 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_011032_010 0.1955929131 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_113203_010 0.1959483596 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_000233_100 0.1964802285 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_000789_240 0.1983453058 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
14 Hb_086336_010 0.1986706628 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_000679_210 0.204199357 - - grr1, plant, putative [Ricinus communis]
16 Hb_000313_370 0.2042219096 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003517_020 0.2051011471 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
18 Hb_001091_020 0.206696489 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_005217_040 0.2070872924 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
20 Hb_134279_010 0.2085417121 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]

Gene co-expression network

sample Hb_053125_010 Hb_053125_010 Hb_001485_010 Hb_001485_010 Hb_053125_010--Hb_001485_010 Hb_102011_010 Hb_102011_010 Hb_053125_010--Hb_102011_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_151706_010 Hb_151706_010 Hb_053125_010--Hb_151706_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_065500_010 Hb_065500_010 Hb_053125_010--Hb_065500_010 Hb_001485_010--Hb_102011_010 Hb_136880_010 Hb_136880_010 Hb_001485_010--Hb_136880_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_001485_010--Hb_065500_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010 Hb_167977_010--Hb_065500_010 Hb_167977_010--Hb_012788_010 Hb_167977_010--Hb_001485_010 Hb_113203_010 Hb_113203_010 Hb_167977_010--Hb_113203_010 Hb_167977_010--Hb_102011_010 Hb_002119_070 Hb_002119_070 Hb_151706_010--Hb_002119_070 Hb_004316_030 Hb_004316_030 Hb_151706_010--Hb_004316_030 Hb_117168_010 Hb_117168_010 Hb_151706_010--Hb_117168_010 Hb_151706_010--Hb_136880_010 Hb_000977_010 Hb_000977_010 Hb_151706_010--Hb_000977_010 Hb_001304_130 Hb_001304_130 Hb_147218_010--Hb_001304_130 Hb_086336_010 Hb_086336_010 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_000875_070 Hb_000875_070 Hb_147218_010--Hb_000875_070 Hb_121992_010 Hb_121992_010 Hb_147218_010--Hb_121992_010 Hb_001486_060 Hb_001486_060 Hb_147218_010--Hb_001486_060 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268498 8.97337 1.08193 3.97227 3.09318 3.80882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.425025 0 1.32174 12.8195 7.25068

CAGE analysis