Hb_053224_010

Information

Type -
Description -
Location Contig53224: 5188-7186
Sequence    

Annotation

kegg
ID vvi:100243183
description protein argonaute 16
nr
ID XP_012080655.1
description PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
swissprot
ID Q9SDG8
description Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1
trembl
ID A0A067K3M5
description Protein argonaute OS=Jatropha curcas GN=JCGZ_13759 PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053224_010 0.0 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
2 Hb_168451_010 0.0003238259 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
3 Hb_032907_020 0.005228334 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000295_140 0.0060574796 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
5 Hb_003784_030 0.0083011518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_086720_010 0.008597952 - - CTV.19 [Citrus trifoliata]
7 Hb_007407_020 0.0096569688 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001021_190 0.0111321473 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_011515_020 0.0138032219 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
10 Hb_138485_010 0.017464445 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
11 Hb_077165_010 0.020577163 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000005_150 0.0214430737 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
13 Hb_002383_010 0.0224647748 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_012758_020 0.0267881982 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_008887_060 0.0269018583 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
16 Hb_005858_010 0.0287133805 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
17 Hb_004117_220 0.0328454388 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
18 Hb_000378_020 0.0330879022 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
19 Hb_000123_080 0.0341577023 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
20 Hb_013405_170 0.0348069782 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_053224_010 Hb_053224_010 Hb_168451_010 Hb_168451_010 Hb_053224_010--Hb_168451_010 Hb_032907_020 Hb_032907_020 Hb_053224_010--Hb_032907_020 Hb_000295_140 Hb_000295_140 Hb_053224_010--Hb_000295_140 Hb_003784_030 Hb_003784_030 Hb_053224_010--Hb_003784_030 Hb_086720_010 Hb_086720_010 Hb_053224_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_053224_010--Hb_007407_020 Hb_168451_010--Hb_032907_020 Hb_168451_010--Hb_000295_140 Hb_168451_010--Hb_003784_030 Hb_168451_010--Hb_086720_010 Hb_168451_010--Hb_007407_020 Hb_032907_020--Hb_000295_140 Hb_032907_020--Hb_086720_010 Hb_032907_020--Hb_007407_020 Hb_138485_010 Hb_138485_010 Hb_032907_020--Hb_138485_010 Hb_000295_140--Hb_086720_010 Hb_000295_140--Hb_007407_020 Hb_000295_140--Hb_138485_010 Hb_001021_190 Hb_001021_190 Hb_003784_030--Hb_001021_190 Hb_011515_020 Hb_011515_020 Hb_003784_030--Hb_011515_020 Hb_077165_010 Hb_077165_010 Hb_003784_030--Hb_077165_010 Hb_000005_150 Hb_000005_150 Hb_003784_030--Hb_000005_150 Hb_086720_010--Hb_007407_020 Hb_086720_010--Hb_138485_010 Hb_007407_020--Hb_138485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0258221 0.0392973 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis