Hb_053262_010

Information

Type -
Description -
Location Contig53262: 1360-2868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053262_010 0.0 - - -
2 Hb_043637_010 0.1141506201 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
3 Hb_170116_010 0.1233222828 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
4 Hb_095397_010 0.1437083757 - - hypothetical protein 25 [Hevea brasiliensis]
5 Hb_032264_130 0.1440146705 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
6 Hb_003304_080 0.1503584253 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
7 Hb_010368_070 0.1503833835 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003906_120 0.151883511 - - -
9 Hb_002875_090 0.1533731433 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001454_390 0.1569134629 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
11 Hb_002232_180 0.1577784634 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
12 Hb_011616_030 0.158470257 - - -
13 Hb_003636_090 0.1588537747 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
14 Hb_007810_040 0.1594100376 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
15 Hb_002989_080 0.1601508568 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
16 Hb_000352_150 0.1601887918 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
17 Hb_000603_200 0.1611619201 - - PREDICTED: myosin-15 [Jatropha curcas]
18 Hb_002172_030 0.1613537861 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
19 Hb_003786_110 0.1674631611 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
20 Hb_001635_220 0.1675771539 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]

Gene co-expression network

sample Hb_053262_010 Hb_053262_010 Hb_043637_010 Hb_043637_010 Hb_053262_010--Hb_043637_010 Hb_170116_010 Hb_170116_010 Hb_053262_010--Hb_170116_010 Hb_095397_010 Hb_095397_010 Hb_053262_010--Hb_095397_010 Hb_032264_130 Hb_032264_130 Hb_053262_010--Hb_032264_130 Hb_003304_080 Hb_003304_080 Hb_053262_010--Hb_003304_080 Hb_010368_070 Hb_010368_070 Hb_053262_010--Hb_010368_070 Hb_043637_010--Hb_170116_010 Hb_003507_020 Hb_003507_020 Hb_043637_010--Hb_003507_020 Hb_007810_040 Hb_007810_040 Hb_043637_010--Hb_007810_040 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_043637_010--Hb_003304_080 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_001454_390 Hb_001454_390 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_095397_010--Hb_007810_040 Hb_003906_120 Hb_003906_120 Hb_095397_010--Hb_003906_120 Hb_095397_010--Hb_003304_080 Hb_002232_180 Hb_002232_180 Hb_095397_010--Hb_002232_180 Hb_000050_120 Hb_000050_120 Hb_095397_010--Hb_000050_120 Hb_095397_010--Hb_043637_010 Hb_002388_060 Hb_002388_060 Hb_032264_130--Hb_002388_060 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_007545_210 Hb_007545_210 Hb_032264_130--Hb_007545_210 Hb_032264_130--Hb_170116_010 Hb_003304_080--Hb_007810_040 Hb_003304_080--Hb_000050_120 Hb_002078_040 Hb_002078_040 Hb_003304_080--Hb_002078_040 Hb_012654_020 Hb_012654_020 Hb_003304_080--Hb_012654_020 Hb_000525_040 Hb_000525_040 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_010368_070--Hb_000050_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2754 0 0.438518 0 8.9781 5.77511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54487 2.9983 3.01411 0.424534 0.254935

CAGE analysis