Hb_053519_010

Information

Type -
Description -
Location Contig53519: 230-988
Sequence    

Annotation

kegg
ID rcu:RCOM_1691800
description hypothetical protein
nr
ID XP_012086740.1
description PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47530: 1-1012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053519_010 0.0 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
2 Hb_020967_010 0.1325177077 - - -
3 Hb_056196_060 0.1365942894 - - hexokinase [Manihot esculenta]
4 Hb_001329_080 0.1465548035 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_004724_330 0.1477968821 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
6 Hb_001246_160 0.1533472863 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
7 Hb_006615_160 0.1537933604 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
8 Hb_001135_030 0.1572482489 - - PREDICTED: interaptin-like [Jatropha curcas]
9 Hb_000056_080 0.1611452423 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
10 Hb_000009_200 0.1646532144 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
11 Hb_002849_070 0.1648068793 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
12 Hb_178793_010 0.1662736082 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
13 Hb_000340_560 0.1667844083 - - conserved hypothetical protein [Ricinus communis]
14 Hb_028487_130 0.1680644414 - - kinase family protein [Populus trichocarpa]
15 Hb_001472_140 0.1687823288 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
16 Hb_008112_010 0.1692932086 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
17 Hb_005714_100 0.1694711709 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
18 Hb_017159_010 0.1697233835 - - -
19 Hb_000200_170 0.1701610972 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_000029_410 0.1701943604 - - AT14A, putative [Ricinus communis]

Gene co-expression network

sample Hb_053519_010 Hb_053519_010 Hb_020967_010 Hb_020967_010 Hb_053519_010--Hb_020967_010 Hb_056196_060 Hb_056196_060 Hb_053519_010--Hb_056196_060 Hb_001329_080 Hb_001329_080 Hb_053519_010--Hb_001329_080 Hb_004724_330 Hb_004724_330 Hb_053519_010--Hb_004724_330 Hb_001246_160 Hb_001246_160 Hb_053519_010--Hb_001246_160 Hb_006615_160 Hb_006615_160 Hb_053519_010--Hb_006615_160 Hb_000336_190 Hb_000336_190 Hb_020967_010--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_020967_010--Hb_001472_140 Hb_000003_760 Hb_000003_760 Hb_020967_010--Hb_000003_760 Hb_003531_040 Hb_003531_040 Hb_020967_010--Hb_003531_040 Hb_105660_010 Hb_105660_010 Hb_020967_010--Hb_105660_010 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_000035_050 Hb_000035_050 Hb_056196_060--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_056196_060--Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_001329_080--Hb_001472_140 Hb_001329_080--Hb_000009_200 Hb_001329_080--Hb_005714_100 Hb_007382_100 Hb_007382_100 Hb_001329_080--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001329_080--Hb_182970_010 Hb_001329_080--Hb_056196_060 Hb_000200_170 Hb_000200_170 Hb_004724_330--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_004724_330--Hb_002849_070 Hb_143766_030 Hb_143766_030 Hb_004724_330--Hb_143766_030 Hb_000056_280 Hb_000056_280 Hb_004724_330--Hb_000056_280 Hb_000056_080 Hb_000056_080 Hb_004724_330--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_004724_330--Hb_000735_140 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_001246_160--Hb_018790_050 Hb_001246_160--Hb_056196_060 Hb_017857_010 Hb_017857_010 Hb_006615_160--Hb_017857_010 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2023 300.732 199.481 297.783 39.2025 44.3997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.461 26.1318 30.8424 94.5216 21.4816

CAGE analysis