Hb_053543_010

Information

Type -
Description -
Location Contig53543: 1-747
Sequence    

Annotation

kegg
ID rcu:RCOM_0848300
description hypothetical protein
nr
ID XP_002526680.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0848300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053543_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000987_050 0.0797719506 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
3 Hb_043959_010 0.103743221 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
4 Hb_000317_080 0.1111812458 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
5 Hb_001268_230 0.1207892229 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_098315_110 0.1243971237 - - conserved hypothetical protein [Ricinus communis]
7 Hb_130177_010 0.1436699405 - - hypothetical protein RCOM_0897890 [Ricinus communis]
8 Hb_004648_040 0.1460397332 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
9 Hb_001628_110 0.1469797002 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
10 Hb_002172_030 0.1474692885 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
11 Hb_010931_110 0.1523557899 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_154381_050 0.1538540529 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001115_050 0.1550313927 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_000300_530 0.155478744 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
15 Hb_000210_130 0.1577739223 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
16 Hb_005410_010 0.1653246492 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
17 Hb_006029_010 0.1659588841 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
18 Hb_010368_070 0.1664165464 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012654_020 0.1671116603 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007111_040 0.16841098 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_053543_010 Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_053543_010--Hb_000987_050 Hb_043959_010 Hb_043959_010 Hb_053543_010--Hb_043959_010 Hb_000317_080 Hb_000317_080 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_053543_010--Hb_098315_110 Hb_130177_010 Hb_130177_010 Hb_053543_010--Hb_130177_010 Hb_000987_050--Hb_000317_080 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_000987_050--Hb_130177_010 Hb_000987_050--Hb_043959_010 Hb_000987_050--Hb_098315_110 Hb_002172_030 Hb_002172_030 Hb_043959_010--Hb_002172_030 Hb_000210_130 Hb_000210_130 Hb_043959_010--Hb_000210_130 Hb_000300_540 Hb_000300_540 Hb_043959_010--Hb_000300_540 Hb_012654_020 Hb_012654_020 Hb_043959_010--Hb_012654_020 Hb_154381_050 Hb_154381_050 Hb_043959_010--Hb_154381_050 Hb_000317_080--Hb_001268_230 Hb_000317_080--Hb_098315_110 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_001268_230--Hb_004648_040 Hb_001268_230--Hb_098315_110 Hb_001268_230--Hb_001628_110 Hb_000300_530 Hb_000300_530 Hb_001268_230--Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_098315_110--Hb_004648_040 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_130177_010--Hb_010931_110 Hb_130177_010--Hb_006029_010 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5251 0.681155 2.80895 0.523539 38.0685 18.2766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88112 5.23556 9.30329 1.60518 0.579668

CAGE analysis