Hb_053575_010

Information

Type -
Description -
Location Contig53575: 41377-42442
Sequence    

Annotation

kegg
ID pmum:103339140
description uncharacterized LOC103339140
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053575_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_003401_040 0.0041678755 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
3 Hb_011114_050 0.0082606505 - - -
4 Hb_042795_010 0.0092444286 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_013874_010 0.0108965897 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
6 Hb_017279_030 0.0142078955 - - -
7 Hb_117252_010 0.0197020613 - - hypothetical protein [Pseudomonas tolaasii]
8 Hb_028105_020 0.0254216639 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
9 Hb_162933_010 0.0266093153 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_003463_040 0.0290488304 - - -
11 Hb_003694_070 0.0335238407 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
12 Hb_007111_020 0.037679253 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
13 Hb_024128_010 0.0404896492 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
14 Hb_139518_020 0.0425590338 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_002417_040 0.0436190616 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_047623_010 0.045201958 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_171554_060 0.0473657396 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
18 Hb_165958_010 0.0542104689 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003245_010 0.0545415024 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_019299_040 0.0556958674 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]

Gene co-expression network

sample Hb_053575_010 Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_053575_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_053575_010--Hb_011114_050 Hb_042795_010 Hb_042795_010 Hb_053575_010--Hb_042795_010 Hb_013874_010 Hb_013874_010 Hb_053575_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_053575_010--Hb_017279_030 Hb_117252_010 Hb_117252_010 Hb_053575_010--Hb_117252_010 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_003401_040--Hb_042795_010 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020 Hb_011114_050--Hb_013874_010 Hb_011114_050--Hb_017279_030 Hb_011114_050--Hb_028105_020 Hb_011114_050--Hb_042795_010 Hb_042795_010--Hb_117252_010 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_013874_010--Hb_017279_030 Hb_013874_010--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_013874_010--Hb_162933_010 Hb_017279_030--Hb_028105_020 Hb_017279_030--Hb_162933_010 Hb_117252_010--Hb_003401_040 Hb_117252_010--Hb_011114_050 Hb_117252_010--Hb_013874_010 Hb_117252_010--Hb_017279_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0388732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.113105

CAGE analysis